Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
PTP4A1Q93096 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PTP4A1Q93096 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.05■□□□□ 0.8
PTP4A1Q93096 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PTP4A1Q93096 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTP4A1Q93096 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
PTP4A1Q93096 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.04■□□□□ 0.8
PTP4A1Q93096 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTP4A1Q93096 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTP4A1Q93096 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTP4A1Q93096 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTP4A1Q93096 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTP4A1Q93096 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTP4A1Q93096 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTP4A1Q93096 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTP4A1Q93096 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
PTP4A1Q93096 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTP4A1Q93096 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTP4A1Q93096 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PTP4A1Q93096 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.03■□□□□ 0.8
PTP4A1Q93096 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.03■□□□□ 0.8
PTP4A1Q93096 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.03■□□□□ 0.8
PTP4A1Q93096 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTP4A1Q93096 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.03■□□□□ 0.8
PTP4A1Q93096 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTP4A1Q93096 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PTP4A1Q93096 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
PTP4A1Q93096 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTP4A1Q93096 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
PTP4A1Q93096 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.02■□□□□ 0.8
PTP4A1Q93096 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.02■□□□□ 0.8
PTP4A1Q93096 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTP4A1Q93096 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTP4A1Q93096 AC103724.3-201ENST00000564481 992 ntBASIC20.02■□□□□ 0.8
PTP4A1Q93096 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
PTP4A1Q93096 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.02■□□□□ 0.8
PTP4A1Q93096 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTP4A1Q93096 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
PTP4A1Q93096 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTP4A1Q93096 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PTP4A1Q93096 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
PTP4A1Q93096 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
PTP4A1Q93096 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
PTP4A1Q93096 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.02■□□□□ 0.79
PTP4A1Q93096 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
PTP4A1Q93096 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
PTP4A1Q93096 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTP4A1Q93096 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTP4A1Q93096 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
PTP4A1Q93096 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTP4A1Q93096 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTP4A1Q93096 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PTP4A1Q93096 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTP4A1Q93096 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTP4A1Q93096 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PTP4A1Q93096 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTP4A1Q93096 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTP4A1Q93096 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTP4A1Q93096 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
PTP4A1Q93096 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
PTP4A1Q93096 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTP4A1Q93096 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTP4A1Q93096 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20■□□□□ 0.79
PTP4A1Q93096 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTP4A1Q93096 AC137767.1-201ENST00000602918 1920 ntBASIC20■□□□□ 0.79
PTP4A1Q93096 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20■□□□□ 0.79
PTP4A1Q93096 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
PTP4A1Q93096 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTP4A1Q93096 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTP4A1Q93096 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTP4A1Q93096 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.99■□□□□ 0.79
PTP4A1Q93096 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PTP4A1Q93096 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.99■□□□□ 0.79
PTP4A1Q93096 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTP4A1Q93096 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
PTP4A1Q93096 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTP4A1Q93096 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTP4A1Q93096 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.99■□□□□ 0.79
PTP4A1Q93096 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.99■□□□□ 0.79
PTP4A1Q93096 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PTP4A1Q93096 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PTP4A1Q93096 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.99■□□□□ 0.79
PTP4A1Q93096 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTP4A1Q93096 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
PTP4A1Q93096 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTP4A1Q93096 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTP4A1Q93096 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.98■□□□□ 0.79
PTP4A1Q93096 TK2-216ENST00000564917 1156 ntTSL 3 BASIC19.98■□□□□ 0.79
PTP4A1Q93096 AL031848.2-201ENST00000607670 837 ntBASIC19.98■□□□□ 0.79
PTP4A1Q93096 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC19.98■□□□□ 0.79
PTP4A1Q93096 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTP4A1Q93096 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
PTP4A1Q93096 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTP4A1Q93096 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTP4A1Q93096 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTP4A1Q93096 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTP4A1Q93096 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.97■□□□□ 0.79
PTP4A1Q93096 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PTP4A1Q93096 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTP4A1Q93096 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms