Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.14■□□□□ 0.81
ZNF404Q494X3 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
ZNF404Q494X3 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.14■□□□□ 0.81
ZNF404Q494X3 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
ZNF404Q494X3 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF404Q494X3 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.13■□□□□ 0.81
ZNF404Q494X3 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
ZNF404Q494X3 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF404Q494X3 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF404Q494X3 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
ZNF404Q494X3 KRT18P10-201ENST00000388836 1287 ntBASIC20.13■□□□□ 0.81
ZNF404Q494X3 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF404Q494X3 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.13■□□□□ 0.81
ZNF404Q494X3 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF404Q494X3 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF404Q494X3 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF404Q494X3 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF404Q494X3 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF404Q494X3 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.12■□□□□ 0.81
ZNF404Q494X3 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
ZNF404Q494X3 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF404Q494X3 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.12■□□□□ 0.81
ZNF404Q494X3 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF404Q494X3 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF404Q494X3 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF404Q494X3 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.12■□□□□ 0.81
ZNF404Q494X3 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF404Q494X3 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF404Q494X3 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF404Q494X3 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
ZNF404Q494X3 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF404Q494X3 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.11■□□□□ 0.81
ZNF404Q494X3 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.11■□□□□ 0.81
ZNF404Q494X3 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.11■□□□□ 0.81
ZNF404Q494X3 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.11■□□□□ 0.81
ZNF404Q494X3 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.11■□□□□ 0.81
ZNF404Q494X3 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF404Q494X3 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF404Q494X3 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF404Q494X3 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.11■□□□□ 0.81
ZNF404Q494X3 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.11■□□□□ 0.81
ZNF404Q494X3 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF404Q494X3 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF404Q494X3 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.11■□□□□ 0.81
ZNF404Q494X3 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF404Q494X3 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
ZNF404Q494X3 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ZNF404Q494X3 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.1■□□□□ 0.81
ZNF404Q494X3 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ZNF404Q494X3 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ZNF404Q494X3 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
ZNF404Q494X3 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
ZNF404Q494X3 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.1■□□□□ 0.81
ZNF404Q494X3 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ZNF404Q494X3 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
ZNF404Q494X3 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ZNF404Q494X3 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZNF404Q494X3 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZNF404Q494X3 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.09■□□□□ 0.81
ZNF404Q494X3 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZNF404Q494X3 AC073130.3-201ENST00000624389 2278 ntBASIC20.09■□□□□ 0.81
ZNF404Q494X3 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZNF404Q494X3 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZNF404Q494X3 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ZNF404Q494X3 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZNF404Q494X3 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.09■□□□□ 0.81
ZNF404Q494X3 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
ZNF404Q494X3 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.09■□□□□ 0.81
ZNF404Q494X3 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.09■□□□□ 0.81
ZNF404Q494X3 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
ZNF404Q494X3 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
ZNF404Q494X3 C11orf96-202ENST00000528572 1834 ntBASIC20.09■□□□□ 0.81
ZNF404Q494X3 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZNF404Q494X3 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZNF404Q494X3 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.81
ZNF404Q494X3 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZNF404Q494X3 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZNF404Q494X3 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.08■□□□□ 0.81
ZNF404Q494X3 AC139795.1-202ENST00000500444 432 ntBASIC20.08■□□□□ 0.81
ZNF404Q494X3 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.08■□□□□ 0.81
ZNF404Q494X3 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ZNF404Q494X3 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ZNF404Q494X3 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ZNF404Q494X3 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ZNF404Q494X3 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
ZNF404Q494X3 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF404Q494X3 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
ZNF404Q494X3 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.07■□□□□ 0.8
ZNF404Q494X3 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF404Q494X3 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.07■□□□□ 0.8
ZNF404Q494X3 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.07■□□□□ 0.8
ZNF404Q494X3 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF404Q494X3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.07■□□□□ 0.8
ZNF404Q494X3 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
ZNF404Q494X3 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF404Q494X3 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
ZNF404Q494X3 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF404Q494X3 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF404Q494X3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF404Q494X3 FBXW4P1-201ENST00000426721 2239 ntBASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms