Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL8A1P27658 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.58■□□□□ 0.72
COL8A1P27658 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL8A1P27658 AP004607.4-201ENST00000530158 1459 ntBASIC19.58■□□□□ 0.72
COL8A1P27658 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL8A1P27658 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL8A1P27658 AL022069.1-201ENST00000568025 1636 ntBASIC19.58■□□□□ 0.72
COL8A1P27658 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.58■□□□□ 0.72
COL8A1P27658 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL8A1P27658 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL8A1P27658 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL8A1P27658 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.57■□□□□ 0.72
COL8A1P27658 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.57■□□□□ 0.72
COL8A1P27658 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.57■□□□□ 0.72
COL8A1P27658 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.57■□□□□ 0.72
COL8A1P27658 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.57■□□□□ 0.72
COL8A1P27658 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL8A1P27658 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.57■□□□□ 0.72
COL8A1P27658 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
COL8A1P27658 SHD-204ENST00000599689 1729 ntTSL 5 BASIC19.56■□□□□ 0.72
COL8A1P27658 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL8A1P27658 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL8A1P27658 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.56■□□□□ 0.72
COL8A1P27658 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL8A1P27658 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
COL8A1P27658 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL8A1P27658 AC008687.6-201ENST00000596318 630 ntBASIC19.56■□□□□ 0.72
COL8A1P27658 AC011767.1-201ENST00000617410 1153 ntBASIC19.56■□□□□ 0.72
COL8A1P27658 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC19.56■□□□□ 0.72
COL8A1P27658 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL8A1P27658 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL8A1P27658 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL8A1P27658 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL8A1P27658 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
COL8A1P27658 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL8A1P27658 FAM201B-201ENST00000458407 597 ntBASIC19.55■□□□□ 0.72
COL8A1P27658 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.55■□□□□ 0.72
COL8A1P27658 AC142086.2-201ENST00000569753 217 ntBASIC19.55■□□□□ 0.72
COL8A1P27658 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
COL8A1P27658 AC133637.1-201ENST00000624115 1537 ntBASIC19.55■□□□□ 0.72
COL8A1P27658 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL8A1P27658 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL8A1P27658 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL8A1P27658 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL8A1P27658 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
COL8A1P27658 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL8A1P27658 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.54■□□□□ 0.72
COL8A1P27658 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL8A1P27658 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL8A1P27658 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.54■□□□□ 0.72
COL8A1P27658 AC087239.1-201ENST00000622671 572 ntBASIC19.54■□□□□ 0.72
COL8A1P27658 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL8A1P27658 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL8A1P27658 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL8A1P27658 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL8A1P27658 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.53■□□□□ 0.72
COL8A1P27658 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL8A1P27658 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL8A1P27658 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.53■□□□□ 0.72
COL8A1P27658 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
COL8A1P27658 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL8A1P27658 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.53■□□□□ 0.72
COL8A1P27658 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.53■□□□□ 0.72
COL8A1P27658 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL8A1P27658 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL8A1P27658 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL8A1P27658 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
COL8A1P27658 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL8A1P27658 AC141586.4-201ENST00000624558 1573 ntBASIC19.53■□□□□ 0.72
COL8A1P27658 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL8A1P27658 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.52■□□□□ 0.72
COL8A1P27658 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL8A1P27658 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC19.52■□□□□ 0.72
COL8A1P27658 SHF-207ENST00000560540 2062 ntTSL 5 BASIC19.52■□□□□ 0.72
COL8A1P27658 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
COL8A1P27658 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.52■□□□□ 0.72
COL8A1P27658 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL8A1P27658 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
COL8A1P27658 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
COL8A1P27658 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL8A1P27658 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL8A1P27658 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL8A1P27658 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL8A1P27658 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL8A1P27658 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL8A1P27658 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.51■□□□□ 0.71
COL8A1P27658 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.51■□□□□ 0.71
COL8A1P27658 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL8A1P27658 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL8A1P27658 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL8A1P27658 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
COL8A1P27658 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL8A1P27658 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
COL8A1P27658 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL8A1P27658 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL8A1P27658 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL8A1P27658 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL8A1P27658 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL8A1P27658 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.5■□□□□ 0.71
COL8A1P27658 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms