Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 pRNA.11-201ENST00000618423 90 ntBASIC18.83■□□□□ 0.6
USF1P22415 pRNA.13-201ENST00000619112 90 ntBASIC18.83■□□□□ 0.6
USF1P22415 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
USF1P22415 LINC00543-201ENST00000567234 1845 ntBASIC18.83■□□□□ 0.6
USF1P22415 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
USF1P22415 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC18.83■□□□□ 0.6
USF1P22415 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
USF1P22415 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.82■□□□□ 0.6
USF1P22415 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USF1P22415 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.82■□□□□ 0.6
USF1P22415 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USF1P22415 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
USF1P22415 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USF1P22415 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USF1P22415 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC18.82■□□□□ 0.6
USF1P22415 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USF1P22415 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USF1P22415 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USF1P22415 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.81■□□□□ 0.6
USF1P22415 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USF1P22415 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.81■□□□□ 0.6
USF1P22415 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
USF1P22415 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USF1P22415 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USF1P22415 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USF1P22415 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USF1P22415 HLA-L-211ENST00000482052 1765 ntBASIC18.81■□□□□ 0.6
USF1P22415 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USF1P22415 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.8■□□□□ 0.6
USF1P22415 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USF1P22415 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF1P22415 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
USF1P22415 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
USF1P22415 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.8■□□□□ 0.6
USF1P22415 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF1P22415 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF1P22415 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.8■□□□□ 0.6
USF1P22415 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF1P22415 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF1P22415 THRA-202ENST00000394121 2260 ntTSL 2 BASIC18.8■□□□□ 0.6
USF1P22415 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF1P22415 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USF1P22415 ALDH1A3-203ENST00000557963 1670 ntBASIC18.79■□□□□ 0.6
USF1P22415 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF1P22415 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF1P22415 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF1P22415 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
USF1P22415 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC18.79■□□□□ 0.6
USF1P22415 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.79■□□□□ 0.6
USF1P22415 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.79■□□□□ 0.6
USF1P22415 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USF1P22415 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF1P22415 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.79■□□□□ 0.6
USF1P22415 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF1P22415 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF1P22415 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USF1P22415 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
USF1P22415 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
USF1P22415 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USF1P22415 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
USF1P22415 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.78■□□□□ 0.6
USF1P22415 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
USF1P22415 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USF1P22415 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USF1P22415 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USF1P22415 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USF1P22415 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC18.78■□□□□ 0.6
USF1P22415 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
USF1P22415 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
USF1P22415 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
USF1P22415 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USF1P22415 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.77■□□□□ 0.6
USF1P22415 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
USF1P22415 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USF1P22415 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USF1P22415 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USF1P22415 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USF1P22415 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
USF1P22415 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC18.76■□□□□ 0.59
USF1P22415 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USF1P22415 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USF1P22415 AC034268.1-201ENST00000441047 882 ntBASIC18.76■□□□□ 0.59
USF1P22415 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.76■□□□□ 0.59
USF1P22415 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USF1P22415 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC18.76■□□□□ 0.59
USF1P22415 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.76■□□□□ 0.59
USF1P22415 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USF1P22415 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USF1P22415 RARA-203ENST00000394086 2008 ntTSL 2 BASIC18.76■□□□□ 0.59
USF1P22415 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USF1P22415 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.75■□□□□ 0.59
USF1P22415 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
USF1P22415 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USF1P22415 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.75■□□□□ 0.59
USF1P22415 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USF1P22415 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USF1P22415 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.75■□□□□ 0.59
USF1P22415 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.75■□□□□ 0.59
USF1P22415 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
USF1P22415 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms