Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC12.53□□□□□ -0.4
CHKB-CPT1BH3BT56 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CHKB-CPT1BH3BT56 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
CHKB-CPT1BH3BT56 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHKB-CPT1BH3BT56 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHKB-CPT1BH3BT56 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC12.52□□□□□ -0.4
CHKB-CPT1BH3BT56 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHKB-CPT1BH3BT56 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHKB-CPT1BH3BT56 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHKB-CPT1BH3BT56 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHKB-CPT1BH3BT56 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC12.52□□□□□ -0.41
CHKB-CPT1BH3BT56 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
CHKB-CPT1BH3BT56 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHKB-CPT1BH3BT56 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CHKB-CPT1BH3BT56 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CHKB-CPT1BH3BT56 WWC2-AS2-201ENST00000578387 2183 ntBASIC12.52□□□□□ -0.41
CHKB-CPT1BH3BT56 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CHKB-CPT1BH3BT56 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHKB-CPT1BH3BT56 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CHKB-CPT1BH3BT56 AC010501.1-201ENST00000606270 1962 ntBASIC12.51□□□□□ -0.41
CHKB-CPT1BH3BT56 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC12.51□□□□□ -0.41
CHKB-CPT1BH3BT56 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHKB-CPT1BH3BT56 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHKB-CPT1BH3BT56 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CHKB-CPT1BH3BT56 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CHKB-CPT1BH3BT56 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHKB-CPT1BH3BT56 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHKB-CPT1BH3BT56 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CHKB-CPT1BH3BT56 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHKB-CPT1BH3BT56 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC12.51□□□□□ -0.41
CHKB-CPT1BH3BT56 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 EML3-217ENST00000531557 2509 ntTSL 5 BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 AC127502.1-201ENST00000399971 1502 ntBASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CHKB-CPT1BH3BT56 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 DUSP8P3-201ENST00000399571 1760 ntBASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC12.49□□□□□ -0.41
CHKB-CPT1BH3BT56 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
CHKB-CPT1BH3BT56 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CHKB-CPT1BH3BT56 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CHKB-CPT1BH3BT56 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CHKB-CPT1BH3BT56 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CHKB-CPT1BH3BT56 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms