Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 AC007686.3-201ENST00000619017 3487 ntBASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 DDC-212ENST00000615193 1674 ntTSL 3 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 SNORD23-201ENST00000408876 110 ntBASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 ACTG1P23-201ENST00000437653 1074 ntBASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 RPL35P1-201ENST00000450819 370 ntBASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 MYL6-215ENST00000549566 685 ntTSL 2 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 EEF1DP7-201ENST00000580496 513 ntBASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 AC139100.2-201ENST00000616901 662 ntBASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
LYSMD4Q5XG99 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 AC111188.1-201ENST00000525758 1833 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 RPL18AP15-201ENST00000430258 517 ntBASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 HNRNPA1P3-201ENST00000440968 551 ntBASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 B9D1-206ENST00000461069 923 ntTSL 2 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 SFPQP1-201ENST00000446621 1786 ntBASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
LYSMD4Q5XG99 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
LYSMD4Q5XG99 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
LYSMD4Q5XG99 BPIFB1-201ENST00000253354 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
LYSMD4Q5XG99 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
LYSMD4Q5XG99 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
LYSMD4Q5XG99 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms