Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 TEX38-201ENST00000334122 866 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 GZMH-202ENST00000382548 687 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 SERPINB8P1-201ENST00000401898 377 ntBASIC16.9■□□□□ 0.3
RC3H1Q5TC82 U3.41-201ENST00000408711 219 ntBASIC16.9■□□□□ 0.3
RC3H1Q5TC82 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 CTLA4-203ENST00000427473 969 ntTSL 5 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 AC074019.1-201ENST00000428788 1096 ntBASIC16.9■□□□□ 0.3
RC3H1Q5TC82 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 TMEM256P1-201ENST00000430550 340 ntBASIC16.9■□□□□ 0.3
RC3H1Q5TC82 DHRSX-IT1-201ENST00000437244 651 ntTSL 5 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 PGAM5-202ENST00000454808 1084 ntTSL 3 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 AC067942.1-202ENST00000471756 1057 ntBASIC16.9■□□□□ 0.3
RC3H1Q5TC82 VAMP2-203ENST00000481878 557 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 AC016650.1-201ENST00000502834 708 ntTSL 2 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 AC104117.1-201ENST00000517817 900 ntBASIC16.9■□□□□ 0.3
RC3H1Q5TC82 AC104117.4-201ENST00000521486 847 ntBASIC16.9■□□□□ 0.3
RC3H1Q5TC82 SCGB1A1-202ENST00000534397 466 ntTSL 3 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 AC104759.1-201ENST00000559109 939 ntBASIC16.9■□□□□ 0.3
RC3H1Q5TC82 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 SMIM22-206ENST00000589327 629 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 CYP2B7P-202ENST00000593298 1087 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC16.9■□□□□ 0.3
RC3H1Q5TC82 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 TRIP12-205ENST00000409677 1507 ntTSL 2 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RC3H1Q5TC82 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC16.89■□□□□ 0.3
RC3H1Q5TC82 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
RC3H1Q5TC82 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC16.89■□□□□ 0.3
RC3H1Q5TC82 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
RC3H1Q5TC82 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
RC3H1Q5TC82 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
RC3H1Q5TC82 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
RC3H1Q5TC82 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 MRPL43-202ENST00000318325 2134 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 SGCA-202ENST00000344627 1057 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 KRTAP4-6-201ENST00000345847 1055 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 USMG5-205ENST00000369825 789 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 AC245128.1-201ENST00000400864 1294 ntTSL 5 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 MIR1226-201ENST00000408658 75 ntBASIC16.89■□□□□ 0.29
RC3H1Q5TC82 AL450322.2-201ENST00000421629 759 ntTSL 3 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 AP000346.2-202ENST00000425948 383 ntBASIC16.89■□□□□ 0.29
RC3H1Q5TC82 AC002066.1-201ENST00000446355 514 ntTSL 5 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 FAM213AP2-201ENST00000521579 683 ntBASIC16.89■□□□□ 0.29
RC3H1Q5TC82 AC079601.2-201ENST00000547729 775 ntBASIC16.89■□□□□ 0.29
RC3H1Q5TC82 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 AC012146.4-201ENST00000575546 271 ntBASIC16.89■□□□□ 0.29
RC3H1Q5TC82 MIR4309-201ENST00000582498 83 ntBASIC16.89■□□□□ 0.29
RC3H1Q5TC82 AC022382.1-201ENST00000602768 336 ntBASIC16.89■□□□□ 0.29
RC3H1Q5TC82 AC090950.1-202ENST00000605733 644 ntBASIC16.89■□□□□ 0.29
RC3H1Q5TC82 AC116036.2-201ENST00000607592 462 ntBASIC16.89■□□□□ 0.29
RC3H1Q5TC82 PILRB-213ENST00000609309 993 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 AC091807.1-201ENST00000418838 1544 ntBASIC16.89■□□□□ 0.29
RC3H1Q5TC82 FLJ16779-201ENST00000612722 7638 ntBASIC16.89■□□□□ 0.29
RC3H1Q5TC82 VWA3B-221ENST00000614454 1542 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RC3H1Q5TC82 AL137077.2-201ENST00000635124 1608 ntBASIC16.88■□□□□ 0.29
RC3H1Q5TC82 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RC3H1Q5TC82 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
RC3H1Q5TC82 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RC3H1Q5TC82 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.88■□□□□ 0.29
RC3H1Q5TC82 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RC3H1Q5TC82 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
RC3H1Q5TC82 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RC3H1Q5TC82 GTF2F2-201ENST00000340473 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RC3H1Q5TC82 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
RC3H1Q5TC82 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RC3H1Q5TC82 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms