Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
USP39Q53GS9 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
USP39Q53GS9 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
USP39Q53GS9 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 NHP2P1-201ENST00000335274 462 ntBASIC14.03□□□□□ -0.16
USP39Q53GS9 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC14.03□□□□□ -0.16
USP39Q53GS9 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
USP39Q53GS9 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC14.03□□□□□ -0.16
USP39Q53GS9 AL929302.1-201ENST00000426556 871 ntBASIC14.03□□□□□ -0.16
USP39Q53GS9 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC14.03□□□□□ -0.16
USP39Q53GS9 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC14.03□□□□□ -0.16
USP39Q53GS9 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC14.03□□□□□ -0.16
USP39Q53GS9 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 TYMSP2-201ENST00000589501 424 ntBASIC14.03□□□□□ -0.16
USP39Q53GS9 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC14.03□□□□□ -0.16
USP39Q53GS9 APOC1-209ENST00000592885 562 ntTSL 3 BASIC14.03□□□□□ -0.16
USP39Q53GS9 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC14.03□□□□□ -0.16
USP39Q53GS9 MME-218ENST00000625667 363 ntTSL 5 BASIC14.03□□□□□ -0.16
USP39Q53GS9 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC14.03□□□□□ -0.16
USP39Q53GS9 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC14.03□□□□□ -0.16
USP39Q53GS9 AL590824.1-201ENST00000403828 1349 ntBASIC14.03□□□□□ -0.16
USP39Q53GS9 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC14.03□□□□□ -0.16
USP39Q53GS9 KRT8P43-201ENST00000406052 1458 ntBASIC14.03□□□□□ -0.16
USP39Q53GS9 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC14.03□□□□□ -0.16
USP39Q53GS9 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 AC023794.5-201ENST00000564380 2157 ntBASIC14.03□□□□□ -0.16
USP39Q53GS9 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.03□□□□□ -0.16
USP39Q53GS9 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 MAPT-IT1-201ENST00000624111 3016 ntBASIC14.03□□□□□ -0.16
USP39Q53GS9 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP39Q53GS9 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
USP39Q53GS9 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
USP39Q53GS9 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
USP39Q53GS9 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.02□□□□□ -0.16
USP39Q53GS9 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.02□□□□□ -0.16
USP39Q53GS9 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
USP39Q53GS9 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
USP39Q53GS9 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
USP39Q53GS9 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.02□□□□□ -0.16
USP39Q53GS9 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
USP39Q53GS9 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
USP39Q53GS9 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.02□□□□□ -0.16
USP39Q53GS9 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
USP39Q53GS9 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
USP39Q53GS9 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
USP39Q53GS9 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
USP39Q53GS9 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC14.02□□□□□ -0.17
USP39Q53GS9 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP39Q53GS9 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC14.02□□□□□ -0.17
USP39Q53GS9 AC073210.1-201ENST00000414799 232 ntBASIC14.02□□□□□ -0.17
USP39Q53GS9 FAM21EP-201ENST00000417804 985 ntBASIC14.02□□□□□ -0.17
USP39Q53GS9 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC14.02□□□□□ -0.17
USP39Q53GS9 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
USP39Q53GS9 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
USP39Q53GS9 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC14.02□□□□□ -0.17
USP39Q53GS9 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC14.02□□□□□ -0.17
USP39Q53GS9 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC14.02□□□□□ -0.17
USP39Q53GS9 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC14.02□□□□□ -0.17
USP39Q53GS9 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP39Q53GS9 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC14.02□□□□□ -0.17
USP39Q53GS9 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC14.02□□□□□ -0.17
USP39Q53GS9 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC14.02□□□□□ -0.17
USP39Q53GS9 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP39Q53GS9 BAK1P2-201ENST00000532665 631 ntBASIC14.02□□□□□ -0.17
USP39Q53GS9 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP39Q53GS9 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC14.02□□□□□ -0.17
USP39Q53GS9 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC14.02□□□□□ -0.17
USP39Q53GS9 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
USP39Q53GS9 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC14.02□□□□□ -0.17
USP39Q53GS9 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC14.02□□□□□ -0.17
USP39Q53GS9 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC14.02□□□□□ -0.17
USP39Q53GS9 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC14.02□□□□□ -0.17
USP39Q53GS9 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC14.02□□□□□ -0.17
USP39Q53GS9 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC14.02□□□□□ -0.17
USP39Q53GS9 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP39Q53GS9 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.02□□□□□ -0.17
USP39Q53GS9 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
USP39Q53GS9 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP39Q53GS9 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP39Q53GS9 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
USP39Q53GS9 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.02□□□□□ -0.17
USP39Q53GS9 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP39Q53GS9 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
USP39Q53GS9 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
USP39Q53GS9 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.02□□□□□ -0.17
USP39Q53GS9 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms