Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 AL137077.2-201ENST00000635124 1608 ntBASIC13.36□□□□□ -0.27
COL28A1Q2UY09 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 GEMIN8P4-201ENST00000380526 729 ntBASIC13.36□□□□□ -0.27
COL28A1Q2UY09 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 KRT18P4-201ENST00000422599 1288 ntBASIC13.36□□□□□ -0.27
COL28A1Q2UY09 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 RPS18P9-201ENST00000482817 460 ntBASIC13.36□□□□□ -0.27
COL28A1Q2UY09 RN7SL564P-201ENST00000496309 250 ntBASIC13.36□□□□□ -0.27
COL28A1Q2UY09 AC113347.2-201ENST00000512350 279 ntBASIC13.36□□□□□ -0.27
COL28A1Q2UY09 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 VENTXP3-201ENST00000546480 773 ntBASIC13.36□□□□□ -0.27
COL28A1Q2UY09 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 FOXN3-AS2-201ENST00000554071 1262 ntBASIC13.36□□□□□ -0.27
COL28A1Q2UY09 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 SORD2P-201ENST00000558556 1069 ntBASIC13.36□□□□□ -0.27
COL28A1Q2UY09 SRP14-208ENST00000560773 468 ntTSL 3 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 AC006116.2-201ENST00000589958 988 ntBASIC13.36□□□□□ -0.27
COL28A1Q2UY09 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 AC011474.4-201ENST00000623523 2076 ntBASIC13.36□□□□□ -0.27
COL28A1Q2UY09 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 AC008536.3-201ENST00000623282 1599 ntBASIC13.36□□□□□ -0.27
COL28A1Q2UY09 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 RN7SL832P-201ENST00000607781 1756 ntBASIC13.35□□□□□ -0.27
COL28A1Q2UY09 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 RNVU1-8-201ENST00000364272 125 ntBASIC13.35□□□□□ -0.27
COL28A1Q2UY09 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 AL157823.1-201ENST00000403727 628 ntBASIC13.35□□□□□ -0.27
COL28A1Q2UY09 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 GOLGA6L16P-201ENST00000441780 1299 ntBASIC13.35□□□□□ -0.27
COL28A1Q2UY09 AC091304.3-201ENST00000566500 716 ntBASIC13.35□□□□□ -0.27
COL28A1Q2UY09 HCG18-241ENST00000602290 821 ntTSL 2 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 AL357143.1-203ENST00000639750 881 ntBASIC13.35□□□□□ -0.27
COL28A1Q2UY09 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms