Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
CXCL1P09341 SRD5A1-201ENST00000274192 7132 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 SOCS2-AS1-201ENST00000499137 3325 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 DNAI2-201ENST00000311014 2236 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 MATR3-233ENST00000504203 2243 ntTSL 2 BASIC10.73□□□□□ -0.69
CXCL1P09341 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
CXCL1P09341 IRAK2-201ENST00000256458 3483 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 RPS10P7-201ENST00000441932 2329 ntTSL 2 BASIC10.73□□□□□ -0.69
CXCL1P09341 HERC2P9-203ENST00000528584 2947 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 GALT-201ENST00000378842 1768 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC10.73□□□□□ -0.69
CXCL1P09341 FUT8-204ENST00000394586 3559 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 PAK1-215ENST00000530617 3001 ntTSL 2 BASIC10.73□□□□□ -0.69
CXCL1P09341 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 TUBB8-204ENST00000564130 2438 ntTSL 5 BASIC10.73□□□□□ -0.69
CXCL1P09341 ARMCX6-201ENST00000361910 1846 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 CHRNA1-208ENST00000636168 1862 ntTSL 5 BASIC10.73□□□□□ -0.69
CXCL1P09341 PICART1-201ENST00000499842 2533 ntTSL 2 BASIC10.73□□□□□ -0.69
CXCL1P09341 SV2A-202ENST00000369146 4416 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
CXCL1P09341 PNKD-204ENST00000436005 978 ntTSL 5 BASIC10.73□□□□□ -0.69
CXCL1P09341 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC10.73□□□□□ -0.69
CXCL1P09341 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC10.73□□□□□ -0.69
CXCL1P09341 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC10.73□□□□□ -0.69
CXCL1P09341 FO681548.1-201ENST00000455617 1132 ntBASIC10.73□□□□□ -0.69
CXCL1P09341 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC10.73□□□□□ -0.69
CXCL1P09341 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC10.73□□□□□ -0.69
CXCL1P09341 DHDH-204ENST00000523250 634 ntTSL 5 BASIC10.73□□□□□ -0.69
CXCL1P09341 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC10.73□□□□□ -0.69
CXCL1P09341 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC10.73□□□□□ -0.69
CXCL1P09341 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC10.73□□□□□ -0.69
CXCL1P09341 LSM12-202ENST00000585388 942 ntTSL 3 BASIC10.73□□□□□ -0.69
CXCL1P09341 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC10.73□□□□□ -0.69
CXCL1P09341 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC10.73□□□□□ -0.69
CXCL1P09341 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC10.73□□□□□ -0.69
CXCL1P09341 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
CXCL1P09341 AL356130.1-201ENST00000620188 1965 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 IGSF9-201ENST00000361509 3996 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 IGF2BP2-204ENST00000457616 3426 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
CXCL1P09341 ECM1-202ENST00000369047 2070 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 KCNAB2-202ENST00000341524 4207 ntAPPRIS P4 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 ATP6AP1-210ENST00000619046 2823 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC10.73□□□□□ -0.69
CXCL1P09341 C2orf69-201ENST00000319974 3728 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 TBC1D3P5-203ENST00000586223 3083 ntTSL 2 BASIC10.73□□□□□ -0.69
CXCL1P09341 AC010336.1-201ENST00000539278 4739 ntBASIC10.73□□□□□ -0.69
CXCL1P09341 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC10.73□□□□□ -0.69
CXCL1P09341 CA14-201ENST00000369111 2403 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 ARF3-201ENST00000256682 4105 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CXCL1P09341 PDHA1-213ENST00000545074 3391 ntAPPRIS ALT1 TSL 2 BASIC10.73□□□□□ -0.69
CXCL1P09341 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
CXCL1P09341 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 TRPM2-203ENST00000397928 6221 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 CPT1B-203ENST00000395650 2662 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 AGAP6-203ENST00000618025 2690 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 USP47-202ENST00000339865 7775 ntTSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 ARHGEF3-213ENST00000496106 1994 ntTSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 HDAC7-202ENST00000354334 4065 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 HDAC7-201ENST00000080059 4095 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 AC011511.5-201ENST00000589379 3219 ntBASIC10.72□□□□□ -0.69
CXCL1P09341 ANKZF1-202ENST00000409849 2155 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 DNAJB12-203ENST00000444643 3278 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 KCNJ10-201ENST00000368089 5528 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 MCAM-201ENST00000264036 3313 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 METTL13-201ENST00000361735 3327 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 AC010969.1-201ENST00000340444 2412 ntTSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 ARAP3-207ENST00000626478 4928 ntTSL 5 BASIC10.72□□□□□ -0.69
CXCL1P09341 AMER3-202ENST00000423981 6172 ntAPPRIS P1 TSL 4 BASIC10.72□□□□□ -0.69
CXCL1P09341 ZNF331-201ENST00000253144 5042 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 NEK6-205ENST00000394199 2535 ntTSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 CALY-202ENST00000368555 783 ntTSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC10.72□□□□□ -0.69
CXCL1P09341 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
CXCL1P09341 METTL26-204ENST00000397665 558 ntTSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC10.72□□□□□ -0.69
CXCL1P09341 TREML5P-201ENST00000421694 576 ntBASIC10.72□□□□□ -0.69
CXCL1P09341 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC10.72□□□□□ -0.69
CXCL1P09341 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC10.72□□□□□ -0.69
CXCL1P09341 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC10.72□□□□□ -0.69
CXCL1P09341 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC10.72□□□□□ -0.69
CXCL1P09341 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC10.72□□□□□ -0.69
CXCL1P09341 MAN2B2-201ENST00000285599 5143 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms