Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 ODCP-201ENST00000459650 1639 ntBASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 MAPT-IT1-201ENST00000624111 3016 ntBASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 MIR33B-201ENST00000385104 96 ntBASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 AC069218.1-201ENST00000435269 762 ntBASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 AC098935.1-201ENST00000446057 611 ntBASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 RPL7P35-201ENST00000446943 740 ntBASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 RN7SL564P-201ENST00000496309 250 ntBASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 RNA5SP417-201ENST00000516459 108 ntBASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 AC087045.2-201ENST00000606279 1003 ntBASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 AL359091.4-201ENST00000610052 409 ntBASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 AC091769.1-201ENST00000619576 568 ntBASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 YRDCP1-201ENST00000621419 643 ntBASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 GOLGA8UP-201ENST00000527159 1755 ntBASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 AC015909.5-201ENST00000624336 2266 ntBASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRIM39Q9HCM9 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
TRIM39Q9HCM9 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
TRIM39Q9HCM9 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC13.77□□□□□ -0.2
TRIM39Q9HCM9 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
TRIM39Q9HCM9 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
TRIM39Q9HCM9 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.77□□□□□ -0.2
TRIM39Q9HCM9 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.2
TRIM39Q9HCM9 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 Z69890.1-201ENST00000382990 339 ntBASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 MIR1307-201ENST00000408840 149 ntBASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms