Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
HMGB1P09429 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HMGB1P09429 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HMGB1P09429 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGB1P09429 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGB1P09429 AC007274.2-201ENST00000421675 662 ntBASIC16.32■□□□□ 0.2
HMGB1P09429 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGB1P09429 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC16.32■□□□□ 0.2
HMGB1P09429 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC16.32■□□□□ 0.2
HMGB1P09429 RBM25-204ENST00000526754 1567 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGB1P09429 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGB1P09429 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC16.32■□□□□ 0.2
HMGB1P09429 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC16.32■□□□□ 0.2
HMGB1P09429 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGB1P09429 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGB1P09429 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC16.32■□□□□ 0.2
HMGB1P09429 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC16.32■□□□□ 0.2
HMGB1P09429 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGB1P09429 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGB1P09429 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGB1P09429 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 STX3-207ENST00000633708 3111 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGB1P09429 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGB1P09429 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HMGB1P09429 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB1P09429 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGB1P09429 AL513497.1-201ENST00000624273 2083 ntBASIC16.31■□□□□ 0.2
HMGB1P09429 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
HMGB1P09429 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB1P09429 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
HMGB1P09429 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
HMGB1P09429 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HMGB1P09429 RNASE7-201ENST00000298690 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HMGB1P09429 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HMGB1P09429 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGB1P09429 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB1P09429 PYY2-201ENST00000315776 282 ntBASIC16.31■□□□□ 0.2
HMGB1P09429 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 AL662890.1-201ENST00000396818 632 ntBASIC16.31■□□□□ 0.2
HMGB1P09429 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC16.31■□□□□ 0.2
HMGB1P09429 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB1P09429 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB1P09429 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB1P09429 AC245884.6-201ENST00000515672 1067 ntBASIC16.31■□□□□ 0.2
HMGB1P09429 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC16.31■□□□□ 0.2
HMGB1P09429 AC138701.2-201ENST00000553634 226 ntBASIC16.31■□□□□ 0.2
HMGB1P09429 AC008687.7-203ENST00000598442 551 ntTSL 4 BASIC16.31■□□□□ 0.2
HMGB1P09429 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB1P09429 CMC2-224ENST00000630396 481 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGB1P09429 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
HMGB1P09429 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGB1P09429 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB1P09429 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB1P09429 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB1P09429 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 PTENP1-202ENST00000532280 3996 ntBASIC16.31■□□□□ 0.2
HMGB1P09429 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGB1P09429 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HMGB1P09429 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGB1P09429 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB1P09429 GALC-206ENST00000544807 2528 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB1P09429 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB1P09429 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HMGB1P09429 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB1P09429 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB1P09429 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB1P09429 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB1P09429 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB1P09429 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB1P09429 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB1P09429 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
HMGB1P09429 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms