Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC12.29□□□□□ -0.44
SOX2P48431 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC12.29□□□□□ -0.44
SOX2P48431 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC12.29□□□□□ -0.44
SOX2P48431 AC092580.1-201ENST00000433998 658 ntBASIC12.29□□□□□ -0.44
SOX2P48431 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 AC006122.1-201ENST00000493323 440 ntBASIC12.29□□□□□ -0.44
SOX2P48431 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC12.29□□□□□ -0.44
SOX2P48431 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 MIR4783-201ENST00000580343 82 ntBASIC12.29□□□□□ -0.44
SOX2P48431 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC12.29□□□□□ -0.44
SOX2P48431 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC12.29□□□□□ -0.44
SOX2P48431 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC12.29□□□□□ -0.44
SOX2P48431 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 AC133540.1-201ENST00000620845 1019 ntBASIC12.29□□□□□ -0.44
SOX2P48431 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
SOX2P48431 RPL35-206ENST00000629845 340 ntTSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 ADAM8-201ENST00000415217 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 MKL1-210ENST00000614754 3917 ntTSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
SOX2P48431 SCN8A-209ENST00000627620 5943 ntAPPRIS ALT1 TSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC12.29□□□□□ -0.44
SOX2P48431 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC12.29□□□□□ -0.44
SOX2P48431 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 KCNMA1-208ENST00000372440 3849 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 KCNMA1-227ENST00000638203 3840 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 KCNMA1-232ENST00000638306 3811 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 KCNMA1-233ENST00000638351 3849 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 KCNJ5-202ENST00000529694 5940 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 ARF3-201ENST00000256682 4105 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC12.28□□□□□ -0.44
SOX2P48431 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC12.28□□□□□ -0.44
SOX2P48431 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
SOX2P48431 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 SEC24B-201ENST00000265175 5083 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 NCDN-203ENST00000373253 3677 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 EPHA1-201ENST00000275815 3363 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 TRIM37-201ENST00000262294 4330 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 CCDC88C-204ENST00000389857 7474 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
SOX2P48431 PGBD1-201ENST00000259883 3100 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 CYYR1-201ENST00000299340 3101 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC12.28□□□□□ -0.44
SOX2P48431 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC12.28□□□□□ -0.44
SOX2P48431 FUZ-207ENST00000526575 482 ntTSL 4 BASIC12.28□□□□□ -0.44
SOX2P48431 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC12.28□□□□□ -0.44
SOX2P48431 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC12.28□□□□□ -0.44
SOX2P48431 AC132938.2-201ENST00000579188 680 ntBASIC12.28□□□□□ -0.44
SOX2P48431 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC12.28□□□□□ -0.44
SOX2P48431 AL355385.1-201ENST00000606123 409 ntBASIC12.28□□□□□ -0.44
SOX2P48431 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC12.28□□□□□ -0.44
SOX2P48431 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
SOX2P48431 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC12.28□□□□□ -0.44
SOX2P48431 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
SOX2P48431 ADCY7-201ENST00000254235 6138 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 PPFIBP1-215ENST00000542629 3208 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 GNPNAT1-201ENST00000216410 3860 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 RNF165-202ENST00000543885 4852 ntTSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 MCL1-204ENST00000620947 3626 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC12.28□□□□□ -0.44
SOX2P48431 COL3A1-201ENST00000304636 5543 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 CHD4-211ENST00000544484 6554 ntTSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 TRPC7-202ENST00000378459 2406 ntTSL 5 BASIC12.28□□□□□ -0.44
SOX2P48431 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC12.28□□□□□ -0.44
SOX2P48431 ZNF41-202ENST00000377065 4531 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 ITGAL-201ENST00000356798 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SOX2P48431 BSDC1-201ENST00000341071 4599 ntTSL 2 BASIC12.28□□□□□ -0.44
SOX2P48431 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC12.28□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms