Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
SOX3P41225 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
SOX3P41225 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
SOX3P41225 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
SOX3P41225 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX3P41225 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
SOX3P41225 DUTP3-201ENST00000450025 415 ntBASIC13.14□□□□□ -0.31
SOX3P41225 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX3P41225 AC114947.1-202ENST00000514136 344 ntBASIC13.14□□□□□ -0.31
SOX3P41225 FOS-206ENST00000555347 1280 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX3P41225 PRKXP1-201ENST00000561423 1122 ntBASIC13.14□□□□□ -0.31
SOX3P41225 AC135782.3-201ENST00000562782 2105 ntBASIC13.14□□□□□ -0.31
SOX3P41225 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC13.14□□□□□ -0.31
SOX3P41225 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC13.14□□□□□ -0.31
SOX3P41225 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC13.14□□□□□ -0.31
SOX3P41225 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC13.14□□□□□ -0.31
SOX3P41225 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC13.14□□□□□ -0.31
SOX3P41225 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 AC007326.1-201ENST00000604539 458 ntBASIC13.14□□□□□ -0.31
SOX3P41225 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX3P41225 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX3P41225 STK40-201ENST00000359297 4837 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX3P41225 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
SOX3P41225 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 PCDHA6-201ENST00000378126 3267 ntBASIC13.14□□□□□ -0.31
SOX3P41225 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC13.14□□□□□ -0.31
SOX3P41225 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX3P41225 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 LINC02486-201ENST00000604157 3000 ntBASIC13.13□□□□□ -0.31
SOX3P41225 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC13.13□□□□□ -0.31
SOX3P41225 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX3P41225 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
SOX3P41225 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
SOX3P41225 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX3P41225 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC13.13□□□□□ -0.31
SOX3P41225 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX3P41225 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
SOX3P41225 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 MIR557-201ENST00000385239 98 ntBASIC13.13□□□□□ -0.31
SOX3P41225 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
SOX3P41225 AL627231.1-201ENST00000394467 1125 ntBASIC13.13□□□□□ -0.31
SOX3P41225 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.13□□□□□ -0.31
SOX3P41225 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
SOX3P41225 AC073869.2-201ENST00000417338 1026 ntBASIC13.13□□□□□ -0.31
SOX3P41225 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC13.13□□□□□ -0.31
SOX3P41225 AL807761.2-201ENST00000422849 729 ntBASIC13.13□□□□□ -0.31
SOX3P41225 MAGEA5-201ENST00000446757 942 ntBASIC13.13□□□□□ -0.31
SOX3P41225 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC13.13□□□□□ -0.31
SOX3P41225 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC13.13□□□□□ -0.31
SOX3P41225 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
SOX3P41225 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC13.13□□□□□ -0.31
SOX3P41225 AL512310.5-201ENST00000551999 515 ntBASIC13.13□□□□□ -0.31
SOX3P41225 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
SOX3P41225 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC13.13□□□□□ -0.31
SOX3P41225 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 AL353726.2-201ENST00000623259 884 ntBASIC13.13□□□□□ -0.31
SOX3P41225 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC13.13□□□□□ -0.31
SOX3P41225 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX3P41225 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX3P41225 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 LINC01815-202ENST00000641468 1409 ntBASIC13.13□□□□□ -0.31
SOX3P41225 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX3P41225 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX3P41225 TUBB8P4-201ENST00000511806 1324 ntBASIC13.13□□□□□ -0.31
SOX3P41225 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
SOX3P41225 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
SOX3P41225 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms