Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HMGB1P09429 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HMGB1P09429 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
HMGB1P09429 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
HMGB1P09429 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
HMGB1P09429 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGB1P09429 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HMGB1P09429 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC16.38■□□□□ 0.21
HMGB1P09429 AL133466.1-201ENST00000447582 150 ntBASIC16.38■□□□□ 0.21
HMGB1P09429 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC16.38■□□□□ 0.21
HMGB1P09429 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16.38■□□□□ 0.21
HMGB1P09429 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC16.38■□□□□ 0.21
HMGB1P09429 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGB1P09429 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC16.38■□□□□ 0.21
HMGB1P09429 AL031673.1-201ENST00000611460 466 ntBASIC16.38■□□□□ 0.21
HMGB1P09429 CU633904.3-201ENST00000624042 1029 ntBASIC16.38■□□□□ 0.21
HMGB1P09429 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGB1P09429 AC138627.1-207ENST00000641560 1006 ntBASIC16.38■□□□□ 0.21
HMGB1P09429 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGB1P09429 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGB1P09429 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HMGB1P09429 AC006372.4-201ENST00000624122 1543 ntBASIC16.38■□□□□ 0.21
HMGB1P09429 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HMGB1P09429 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
HMGB1P09429 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGB1P09429 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 PDXDC2P-206ENST00000534700 1315 ntBASIC16.38■□□□□ 0.21
HMGB1P09429 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC16.38■□□□□ 0.21
HMGB1P09429 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGB1P09429 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
HMGB1P09429 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGB1P09429 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGB1P09429 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 API5-208ENST00000531273 1868 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGB1P09429 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
HMGB1P09429 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
HMGB1P09429 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
HMGB1P09429 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 DDX19B-202ENST00000355992 1692 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGB1P09429 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
HMGB1P09429 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
HMGB1P09429 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGB1P09429 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
HMGB1P09429 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGB1P09429 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 GGTLC4P-201ENST00000402176 664 ntBASIC16.37■□□□□ 0.21
HMGB1P09429 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 AC018638.5-201ENST00000450885 754 ntBASIC16.37■□□□□ 0.21
HMGB1P09429 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGB1P09429 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC16.37■□□□□ 0.21
HMGB1P09429 SCARNA12-201ENST00000459155 270 ntBASIC16.37■□□□□ 0.21
HMGB1P09429 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 AC095040.1-201ENST00000513286 675 ntBASIC16.37■□□□□ 0.21
HMGB1P09429 NAA40-205ENST00000539656 577 ntTSL 4 BASIC16.37■□□□□ 0.21
HMGB1P09429 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGB1P09429 RN7SL574P-201ENST00000581512 297 ntBASIC16.37■□□□□ 0.21
HMGB1P09429 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGB1P09429 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGB1P09429 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
HMGB1P09429 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 AC002350.2-201ENST00000623894 1828 ntBASIC16.37■□□□□ 0.21
HMGB1P09429 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
HMGB1P09429 CARS-214ENST00000529772 2637 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGB1P09429 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGB1P09429 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB1P09429 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB1P09429 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms