Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CHCHD2P2-201ENST00000503744 321 ntBASIC14.16□□□□□ -0.14
USP39Q53GS9 MAX-218ENST00000557746 571 ntTSL 4 BASIC14.16□□□□□ -0.14
USP39Q53GS9 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC14.16□□□□□ -0.14
USP39Q53GS9 AC013553.1-201ENST00000560906 267 ntBASIC14.16□□□□□ -0.14
USP39Q53GS9 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC14.16□□□□□ -0.14
USP39Q53GS9 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC14.16□□□□□ -0.14
USP39Q53GS9 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC14.16□□□□□ -0.14
USP39Q53GS9 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 AL109809.1-201ENST00000418979 1367 ntBASIC14.16□□□□□ -0.14
USP39Q53GS9 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC14.16□□□□□ -0.14
USP39Q53GS9 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
USP39Q53GS9 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
USP39Q53GS9 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC14.16□□□□□ -0.14
USP39Q53GS9 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
USP39Q53GS9 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
USP39Q53GS9 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 AC079781.5-202ENST00000641784 3743 ntBASIC14.16□□□□□ -0.14
USP39Q53GS9 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.15□□□□□ -0.14
USP39Q53GS9 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
USP39Q53GS9 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.15□□□□□ -0.14
USP39Q53GS9 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.15□□□□□ -0.14
USP39Q53GS9 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
USP39Q53GS9 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC14.15□□□□□ -0.14
USP39Q53GS9 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC14.15□□□□□ -0.14
USP39Q53GS9 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.15□□□□□ -0.14
USP39Q53GS9 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
USP39Q53GS9 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC14.15□□□□□ -0.14
USP39Q53GS9 AC006529.1-201ENST00000459978 637 ntBASIC14.15□□□□□ -0.14
USP39Q53GS9 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC14.15□□□□□ -0.14
USP39Q53GS9 RN7SKP155-201ENST00000516031 288 ntBASIC14.15□□□□□ -0.14
USP39Q53GS9 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC14.15□□□□□ -0.14
USP39Q53GS9 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 CMC2-204ENST00000562713 573 ntTSL 3 BASIC14.15□□□□□ -0.14
USP39Q53GS9 CMC2-209ENST00000565108 399 ntTSL 2 BASIC14.15□□□□□ -0.14
USP39Q53GS9 COX5A-205ENST00000568517 582 ntTSL 3 BASIC14.15□□□□□ -0.14
USP39Q53GS9 MIR4265-201ENST00000582152 99 ntBASIC14.15□□□□□ -0.14
USP39Q53GS9 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC14.15□□□□□ -0.14
USP39Q53GS9 CYP4F36P-201ENST00000589193 186 ntBASIC14.15□□□□□ -0.14
USP39Q53GS9 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 AC018695.6-201ENST00000614011 534 ntBASIC14.15□□□□□ -0.14
USP39Q53GS9 AC148477.9-201ENST00000623974 539 ntBASIC14.15□□□□□ -0.14
USP39Q53GS9 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
USP39Q53GS9 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 MIR193BHG-211ENST00000641433 5365 ntBASIC14.15□□□□□ -0.14
USP39Q53GS9 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
USP39Q53GS9 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
USP39Q53GS9 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USP39Q53GS9 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.15□□□□□ -0.15
USP39Q53GS9 DMBT1P1-203ENST00000636837 4628 ntBASIC14.14□□□□□ -0.15
USP39Q53GS9 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.14□□□□□ -0.15
USP39Q53GS9 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 AC019109.1-201ENST00000401725 1874 ntBASIC14.14□□□□□ -0.15
USP39Q53GS9 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.14□□□□□ -0.15
USP39Q53GS9 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.14□□□□□ -0.15
USP39Q53GS9 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC14.14□□□□□ -0.15
USP39Q53GS9 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.14□□□□□ -0.15
USP39Q53GS9 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.14□□□□□ -0.15
USP39Q53GS9 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
USP39Q53GS9 MIR566-201ENST00000385187 94 ntBASIC14.14□□□□□ -0.15
USP39Q53GS9 OR52M2P-201ENST00000414298 959 ntBASIC14.14□□□□□ -0.15
USP39Q53GS9 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 KRT18P46-201ENST00000435568 1279 ntBASIC14.14□□□□□ -0.15
USP39Q53GS9 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.14□□□□□ -0.15
USP39Q53GS9 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms