Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC12.45□□□□□ -0.42
H3F3AP84243 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC12.45□□□□□ -0.42
H3F3AP84243 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC12.45□□□□□ -0.42
H3F3AP84243 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC12.45□□□□□ -0.42
H3F3AP84243 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC12.45□□□□□ -0.42
H3F3AP84243 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 RN7SL81P-201ENST00000493781 261 ntBASIC12.45□□□□□ -0.42
H3F3AP84243 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 ORAOV1P1-201ENST00000503108 395 ntBASIC12.45□□□□□ -0.42
H3F3AP84243 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC12.45□□□□□ -0.42
H3F3AP84243 AC019193.1-201ENST00000506678 823 ntBASIC12.45□□□□□ -0.42
H3F3AP84243 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC12.45□□□□□ -0.42
H3F3AP84243 MIR4326-201ENST00000582203 59 ntBASIC12.45□□□□□ -0.42
H3F3AP84243 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC12.45□□□□□ -0.42
H3F3AP84243 MIR2392-201ENST00000584881 84 ntBASIC12.45□□□□□ -0.42
H3F3AP84243 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC12.45□□□□□ -0.42
H3F3AP84243 AC103810.10-201ENST00000606504 343 ntBASIC12.45□□□□□ -0.42
H3F3AP84243 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
H3F3AP84243 PPA1-206ENST00000625364 644 ntTSL 5 BASIC12.45□□□□□ -0.42
H3F3AP84243 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
H3F3AP84243 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 PES1P2-201ENST00000449745 1735 ntBASIC12.45□□□□□ -0.42
H3F3AP84243 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC12.45□□□□□ -0.42
H3F3AP84243 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC12.45□□□□□ -0.42
H3F3AP84243 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC12.45□□□□□ -0.42
H3F3AP84243 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 AC019109.1-201ENST00000401725 1874 ntBASIC12.44□□□□□ -0.42
H3F3AP84243 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC12.44□□□□□ -0.42
H3F3AP84243 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC12.44□□□□□ -0.42
H3F3AP84243 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC12.44□□□□□ -0.42
H3F3AP84243 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
H3F3AP84243 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC12.44□□□□□ -0.42
H3F3AP84243 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC12.44□□□□□ -0.42
H3F3AP84243 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC12.44□□□□□ -0.42
H3F3AP84243 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 AC026316.1-201ENST00000398900 414 ntBASIC12.44□□□□□ -0.42
H3F3AP84243 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC12.44□□□□□ -0.42
H3F3AP84243 AC005722.1-201ENST00000431878 964 ntBASIC12.44□□□□□ -0.42
H3F3AP84243 EEF1DP2-201ENST00000433698 843 ntBASIC12.44□□□□□ -0.42
H3F3AP84243 AL627422.1-201ENST00000434104 580 ntBASIC12.44□□□□□ -0.42
H3F3AP84243 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC12.44□□□□□ -0.42
H3F3AP84243 MRPL22P1-201ENST00000505398 616 ntBASIC12.44□□□□□ -0.42
H3F3AP84243 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC12.44□□□□□ -0.42
H3F3AP84243 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC12.44□□□□□ -0.42
H3F3AP84243 TPM1-223ENST00000560445 485 ntTSL 3 BASIC12.44□□□□□ -0.42
H3F3AP84243 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC12.44□□□□□ -0.42
H3F3AP84243 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC12.44□□□□□ -0.42
H3F3AP84243 MIR3940-201ENST00000579148 102 ntBASIC12.44□□□□□ -0.42
H3F3AP84243 AL356740.1-201ENST00000602192 1297 ntBASIC12.44□□□□□ -0.42
H3F3AP84243 AL049840.2-201ENST00000602722 535 ntBASIC12.44□□□□□ -0.42
H3F3AP84243 AC005632.3-201ENST00000605544 308 ntBASIC12.44□□□□□ -0.42
H3F3AP84243 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC12.44□□□□□ -0.42
H3F3AP84243 AP001184.1-201ENST00000637936 376 ntBASIC12.44□□□□□ -0.42
H3F3AP84243 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC12.44□□□□□ -0.42
H3F3AP84243 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC12.44□□□□□ -0.42
H3F3AP84243 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC12.44□□□□□ -0.42
H3F3AP84243 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC12.44□□□□□ -0.42
H3F3AP84243 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
H3F3AP84243 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC12.44□□□□□ -0.42
H3F3AP84243 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
H3F3AP84243 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
H3F3AP84243 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
H3F3AP84243 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
H3F3AP84243 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms