Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC11.92□□□□□ -0.5
SDCBPO00560 EEF1DP1-201ENST00000585891 896 ntBASIC11.92□□□□□ -0.5
SDCBPO00560 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC11.92□□□□□ -0.5
SDCBPO00560 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC11.92□□□□□ -0.5
SDCBPO00560 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
SDCBPO00560 AC133552.6-201ENST00000613406 534 ntBASIC11.92□□□□□ -0.5
SDCBPO00560 MIR6775-201ENST00000617557 69 ntBASIC11.92□□□□□ -0.5
SDCBPO00560 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
SDCBPO00560 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 SLC5A8-201ENST00000536262 4178 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC11.92□□□□□ -0.5
SDCBPO00560 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 FBRSL1-205ENST00000542061 3175 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
SDCBPO00560 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 AC010970.1-201ENST00000445125 1848 ntBASIC11.92□□□□□ -0.5
SDCBPO00560 DGKZ-204ENST00000454345 4086 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
SDCBPO00560 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC11.92□□□□□ -0.5
SDCBPO00560 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
SDCBPO00560 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 RERE-212ENST00000476556 4598 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC11.92□□□□□ -0.5
SDCBPO00560 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
SDCBPO00560 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SDCBPO00560 GHET1-201ENST00000627071 1906 ntBASIC11.92□□□□□ -0.5
SDCBPO00560 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC11.92□□□□□ -0.5
SDCBPO00560 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC11.91□□□□□ -0.5
SDCBPO00560 SMARCA4-205ENST00000450717 5506 ntTSL 5 BASIC11.91□□□□□ -0.5
SDCBPO00560 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
SDCBPO00560 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC11.91□□□□□ -0.5
SDCBPO00560 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
SDCBPO00560 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
SDCBPO00560 OR2I1P-208ENST00000641137 4948 ntBASIC11.91□□□□□ -0.5
SDCBPO00560 GPR176-201ENST00000299092 3844 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC11.91□□□□□ -0.5
SDCBPO00560 CCT8L1P-201ENST00000465400 1674 ntBASIC11.91□□□□□ -0.5
SDCBPO00560 AC073862.5-201ENST00000624129 2027 ntBASIC11.91□□□□□ -0.5
SDCBPO00560 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
SDCBPO00560 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 HPSE-201ENST00000311412 4615 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC11.91□□□□□ -0.5
SDCBPO00560 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
SDCBPO00560 CT62-203ENST00000566432 2822 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
SDCBPO00560 LINC01165-201ENST00000445190 1623 ntBASIC11.91□□□□□ -0.5
SDCBPO00560 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
SDCBPO00560 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 AC079776.1-201ENST00000401540 1152 ntBASIC11.91□□□□□ -0.5
SDCBPO00560 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
SDCBPO00560 HMGA1P1-201ENST00000415560 1062 ntBASIC11.91□□□□□ -0.5
SDCBPO00560 FAM21FP-201ENST00000426241 1131 ntBASIC11.91□□□□□ -0.5
SDCBPO00560 AC012441.2-201ENST00000444843 739 ntBASIC11.91□□□□□ -0.5
SDCBPO00560 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC11.91□□□□□ -0.5
SDCBPO00560 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC11.91□□□□□ -0.5
SDCBPO00560 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC11.91□□□□□ -0.5
SDCBPO00560 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC11.91□□□□□ -0.5
SDCBPO00560 AL512310.5-201ENST00000551999 515 ntBASIC11.91□□□□□ -0.5
SDCBPO00560 RNF41-210ENST00000552244 716 ntTSL 3 BASIC11.91□□□□□ -0.5
SDCBPO00560 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC11.91□□□□□ -0.5
SDCBPO00560 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC11.91□□□□□ -0.5
SDCBPO00560 ARL16-210ENST00000574938 751 ntTSL 2 BASIC11.91□□□□□ -0.5
SDCBPO00560 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC11.91□□□□□ -0.5
SDCBPO00560 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC11.91□□□□□ -0.5
SDCBPO00560 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
SDCBPO00560 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC11.91□□□□□ -0.5
SDCBPO00560 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC11.91□□□□□ -0.5
SDCBPO00560 ZBTB44-202ENST00000397753 3951 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
SDCBPO00560 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 TJP2-206ENST00000453658 4129 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
SDCBPO00560 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 PERP-201ENST00000421351 4290 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 REXO1L6P-201ENST00000603433 1515 ntBASIC11.91□□□□□ -0.5
SDCBPO00560 SIRPA-204ENST00000622179 4570 ntAPPRIS ALT1 TSL 5 BASIC11.91□□□□□ -0.5
SDCBPO00560 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC11.91□□□□□ -0.5
SDCBPO00560 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SDCBPO00560 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
SDCBPO00560 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC11.9□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms