RNA–Protein interactions for RNA: ENST00000542877.5

TNC-212, Transcript of tenascin C, humanhuman

TSL 1 (best) BASIC

Gene TNC, Length 5,517 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNC-212ENST00000542877 DCAF8L2P0C7V8 631 aa22.21■■□□□ 1.15
TNC-212ENST00000542877 SUPT5HO00267 1087 aaKnown RBP21.4■■□□□ 1.02
TNC-212ENST00000542877 NISCHQ9Y2I1 1504 aa21.23■□□□□ 0.99
TNC-212ENST00000542877 SHROOM4Q9ULL8 1493 aa20.88■□□□□ 0.93
TNC-212ENST00000542877 PELP1Q8IZL8 1130 aaKnown RBP20.88■□□□□ 0.93
TNC-212ENST00000542877 EHMT2Q96KQ7 1210 aa20.61■□□□□ 0.89
TNC-212ENST00000542877 APLP2Q06481 763 aa20.47■□□□□ 0.87
TNC-212ENST00000542877 PCGF6Q9BYE7 350 aa20.28■□□□□ 0.84
TNC-212ENST00000542877 FAM9AQ8IZU1 332 aaPredicted RBP20.16■□□□□ 0.82
TNC-212ENST00000542877 ZEB1P37275 1124 aaPredicted RBP20.16■□□□□ 0.82
TNC-212ENST00000542877 CENPBP07199 599 aaPredicted RBP20.14■□□□□ 0.81
TNC-212ENST00000542877 TTBK1Q5TCY1 1321 aaPredicted RBP19.99■□□□□ 0.79
TNC-212ENST00000542877 ERICH6Q7L0X2 663 aa19.93■□□□□ 0.78
TNC-212ENST00000542877 CCER1Q8TC90 406 aaPredicted RBP19.92■□□□□ 0.78
TNC-212ENST00000542877 TRIM41Q8WV44 630 aa19.86■□□□□ 0.77
TNC-212ENST00000542877 MYT1Q01538 1121 aa19.76■□□□□ 0.75
TNC-212ENST00000542877 RANGAP1P46060 587 aaPredicted RBP19.67■□□□□ 0.74
TNC-212ENST00000542877 NEFLP07196 543 aa19.63■□□□□ 0.73
TNC-212ENST00000542877 UBTFP17480 764 aaKnown RBP19.6■□□□□ 0.73
TNC-212ENST00000542877 ATP1B4Q9UN42 357 aaPredicted RBP19.53■□□□□ 0.72
TNC-212ENST00000542877 YTHDC1Q96MU7 727 aaKnown RBP19.51■□□□□ 0.71
TNC-212ENST00000542877 TRIM26Q12899 539 aaPredicted RBP19.47■□□□□ 0.71
TNC-212ENST00000542877 HRCP23327 699 aa19.38■□□□□ 0.69
TNC-212ENST00000542877 PPARGC1BQ86YN6 1023 aaKnown RBP19.27■□□□□ 0.68
TNC-212ENST00000542877 CHIC1Q5VXU3 224 aa19.07■□□□□ 0.64
TNC-212ENST00000542877 DAXXQ9UER7 740 aaPredicted RBP19.04■□□□□ 0.64
TNC-212ENST00000542877 LOC105371045A0A1W2PR82 267 aa19.02■□□□□ 0.64
TNC-212ENST00000542877 ITGAEP38570 1179 aa18.97■□□□□ 0.63
TNC-212ENST00000542877 HNRNPUL2Q1KMD3 747 aaKnown RBP18.93■□□□□ 0.62
TNC-212ENST00000542877 POLR3GLQ9BT43 218 aa18.87■□□□□ 0.61
TNC-212ENST00000542877 DIEXFQ68CQ4 756 aaKnown RBP18.84■□□□□ 0.61
TNC-212ENST00000542877 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.8■□□□□ 0.6
TNC-212ENST00000542877 MYT1LQ9UL68 1186 aa18.7■□□□□ 0.58
TNC-212ENST00000542877 RTL5Q5HYW3 569 aaPredicted RBP18.7■□□□□ 0.58
TNC-212ENST00000542877 CNGB1Q14028 1251 aaPredicted RBP18.64■□□□□ 0.57
TNC-212ENST00000542877 ZNF316A6NFI3 1004 aaPredicted RBP18.6■□□□□ 0.57
TNC-212ENST00000542877 CLSPNQ9HAW4 1339 aa18.54■□□□□ 0.56
TNC-212ENST00000542877 GTF3C3Q9Y5Q9 886 aa18.52■□□□□ 0.56
TNC-212ENST00000542877 FAM50AQ14320 339 aaKnown RBP18.51■□□□□ 0.55
TNC-212ENST00000542877 SLC4A1APQ9BWU0 796 aaKnown RBP18.45■□□□□ 0.54
TNC-212ENST00000542877 ANP32CO43423 234 aa18.42■□□□□ 0.54
TNC-212ENST00000542877 TRIM52Q96A61 297 aa18.42■□□□□ 0.54
TNC-212ENST00000542877 NEUROD1Q13562 356 aa18.41■□□□□ 0.54
TNC-212ENST00000542877 CDK11AQ9UQ88 783 aaPredicted RBP18.39■□□□□ 0.53
TNC-212ENST00000542877 BCANQ96GW7 911 aa18.39■□□□□ 0.53
TNC-212ENST00000542877 ACIN1Q9UKV3 1341 aaKnown RBP18.3■□□□□ 0.52
TNC-212ENST00000542877 ZNF326Q5BKZ1 582 aaKnown RBP18.18■□□□□ 0.5
TNC-212ENST00000542877 ZBTB47Q9UFB7 747 aaPredicted RBP18.15■□□□□ 0.5
TNC-212ENST00000542877 ANP32AP39687 249 aaKnown RBP18.09■□□□□ 0.49
TNC-212ENST00000542877 PABPN1Q86U42 306 aaKnown RBP eCLIP18.09■□□□□ 0.49
TNC-212ENST00000542877 CSRNP3Q8WYN3 585 aa18.09■□□□□ 0.49
TNC-212ENST00000542877 CANXP27824 592 aaKnown RBP18.06■□□□□ 0.48
TNC-212ENST00000542877 ABCC9O60706 1549 aa18.04■□□□□ 0.48
TNC-212ENST00000542877 DCAF1Q9Y4B6 1507 aa17.97■□□□□ 0.47
TNC-212ENST00000542877 NEFMP07197 916 aa17.96■□□□□ 0.47
TNC-212ENST00000542877 FKBP8Q14318 412 aa17.93■□□□□ 0.46
TNC-212ENST00000542877 P3H3Q8IVL6 736 aa17.9■□□□□ 0.46
TNC-212ENST00000542877 NPM2Q86SE8 214 aaKnown RBP17.88■□□□□ 0.45
TNC-212ENST00000542877 TONSLQ96HA7 1378 aa17.87■□□□□ 0.45
TNC-212ENST00000542877 FBLN2P98095 1184 aa17.86■□□□□ 0.45
TNC-212ENST00000542877 HNRNPUQ00839 825 aaKnown RBP eCLIP17.83■□□□□ 0.44
TNC-212ENST00000542877 BCL11AQ9H165 835 aa17.81■□□□□ 0.44
TNC-212ENST00000542877 ANP32BQ92688 251 aaKnown RBP17.78■□□□□ 0.44
TNC-212ENST00000542877 SLC24A1O60721 1099 aa17.78■□□□□ 0.44
TNC-212ENST00000542877 DDX10Q13206 875 aaKnown RBP17.78■□□□□ 0.44
TNC-212ENST00000542877 ZNF777Q9ULD5 760 aaPredicted RBP17.78■□□□□ 0.44
TNC-212ENST00000542877 ARID3CA6NKF2 412 aa17.77■□□□□ 0.43
TNC-212ENST00000542877 UPF2Q9HAU5 1272 aaKnown RBP17.75■□□□□ 0.43
TNC-212ENST00000542877 FAM9BQ8IZU0 186 aa17.73■□□□□ 0.43
TNC-212ENST00000542877 EIF5BO60841 1220 aaKnown RBP17.71■□□□□ 0.43
TNC-212ENST00000542877 HSP90AA1P07900 732 aaKnown RBP17.7■□□□□ 0.42
TNC-212ENST00000542877 CCDC136Q96JN2 1154 aa17.68■□□□□ 0.42
TNC-212ENST00000542877 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.64■□□□□ 0.41
TNC-212ENST00000542877 TMC1Q8TDI8 760 aa17.64■□□□□ 0.41
TNC-212ENST00000542877 SCAF1Q9H7N4 1312 aaKnown RBP17.63■□□□□ 0.41
TNC-212ENST00000542877 GLIPR1L2Q4G1C9 344 aa17.59■□□□□ 0.41
TNC-212ENST00000542877 MIER1Q8N108 512 aa17.59■□□□□ 0.41
TNC-212ENST00000542877 ZCCHC6Q5VYS8 1495 aaKnown RBP17.59■□□□□ 0.41
TNC-212ENST00000542877 MRS2Q9HD23 443 aa17.58■□□□□ 0.41
TNC-212ENST00000542877 SCRIBQ14160 1630 aa17.57■□□□□ 0.4
TNC-212ENST00000542877 NBR1Q14596 966 aa17.56■□□□□ 0.4
TNC-212ENST00000542877 SALL2Q9Y467 1007 aaPredicted RBP17.56■□□□□ 0.4
TNC-212ENST00000542877 WDR43Q15061 677 aaKnown RBP eCLIP17.52■□□□□ 0.4
TNC-212ENST00000542877 CHGAP10645 457 aaKnown RBP17.52■□□□□ 0.39
TNC-212ENST00000542877 CHIC2Q9UKJ5 165 aa17.51■□□□□ 0.39
TNC-212ENST00000542877 ESF1Q9H501 851 aaKnown RBP17.47■□□□□ 0.39
TNC-212ENST00000542877 CLIP1P30622 1438 aa17.46■□□□□ 0.39
TNC-212ENST00000542877 STAG3Q9UJ98 1225 aa17.46■□□□□ 0.39
TNC-212ENST00000542877 EIF4G2P78344 907 aaKnown RBP eCLIP17.46■□□□□ 0.38
TNC-212ENST00000542877 MTUS2Q5JR59 1369 aa17.45■□□□□ 0.38
TNC-212ENST00000542877 IRX6P78412 446 aaPredicted RBP17.43■□□□□ 0.38
TNC-212ENST00000542877 TSPY4P0CV99 314 aa17.43■□□□□ 0.38
TNC-212ENST00000542877 TSPY10P0CW01 314 aa17.43■□□□□ 0.38
TNC-212ENST00000542877 DDRGK1Q96HY6 314 aa17.41■□□□□ 0.38
TNC-212ENST00000542877 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.4■□□□□ 0.38
TNC-212ENST00000542877 KDM2AQ9Y2K7 1162 aa17.39■□□□□ 0.37
TNC-212ENST00000542877 EEA1Q15075 1411 aa17.38■□□□□ 0.37
TNC-212ENST00000542877 HIRIP3Q9BW71 556 aaPredicted RBP17.37■□□□□ 0.37
TNC-212ENST00000542877 BECN1Q14457 450 aa17.36■□□□□ 0.37
TNC-212ENST00000542877 ARXQ96QS3 562 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms