Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 THY1-209ENST00000580275 578 ntTSL 3 BASIC14.18□□□□□ -0.14
USP39Q53GS9 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
USP39Q53GS9 AC008972.2-201ENST00000606587 494 ntBASIC14.18□□□□□ -0.14
USP39Q53GS9 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
USP39Q53GS9 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 MSANTD2P1-201ENST00000445341 1368 ntBASIC14.18□□□□□ -0.14
USP39Q53GS9 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
USP39Q53GS9 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.18□□□□□ -0.14
USP39Q53GS9 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.18□□□□□ -0.14
USP39Q53GS9 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.18□□□□□ -0.14
USP39Q53GS9 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.17□□□□□ -0.14
USP39Q53GS9 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.17□□□□□ -0.14
USP39Q53GS9 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.17□□□□□ -0.14
USP39Q53GS9 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 TCAM1P-207ENST00000485295 1537 ntBASIC14.17□□□□□ -0.14
USP39Q53GS9 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
USP39Q53GS9 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC14.17□□□□□ -0.14
USP39Q53GS9 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
USP39Q53GS9 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC14.17□□□□□ -0.14
USP39Q53GS9 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
USP39Q53GS9 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC14.17□□□□□ -0.14
USP39Q53GS9 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC14.17□□□□□ -0.14
USP39Q53GS9 OR2A1-AS1-210ENST00000496968 531 ntBASIC14.17□□□□□ -0.14
USP39Q53GS9 IGHV1-12-201ENST00000518307 205 ntBASIC14.17□□□□□ -0.14
USP39Q53GS9 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC14.17□□□□□ -0.14
USP39Q53GS9 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
USP39Q53GS9 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 KLF17P1-201ENST00000547105 1126 ntBASIC14.17□□□□□ -0.14
USP39Q53GS9 USB1-205ENST00000561743 1135 ntTSL 3 BASIC14.17□□□□□ -0.14
USP39Q53GS9 TRMT112P3-201ENST00000580149 358 ntBASIC14.17□□□□□ -0.14
USP39Q53GS9 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC14.17□□□□□ -0.14
USP39Q53GS9 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
USP39Q53GS9 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
USP39Q53GS9 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
USP39Q53GS9 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
USP39Q53GS9 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
USP39Q53GS9 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
USP39Q53GS9 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.17□□□□□ -0.14
USP39Q53GS9 KRT8P24-201ENST00000560290 1559 ntBASIC14.17□□□□□ -0.14
USP39Q53GS9 AC011498.7-201ENST00000624986 2027 ntBASIC14.17□□□□□ -0.14
USP39Q53GS9 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.17□□□□□ -0.14
USP39Q53GS9 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.17□□□□□ -0.14
USP39Q53GS9 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP39Q53GS9 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 TET3-201ENST00000305799 5174 ntTSL 5 BASIC14.16□□□□□ -0.14
USP39Q53GS9 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC14.16□□□□□ -0.14
USP39Q53GS9 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
USP39Q53GS9 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
USP39Q53GS9 ODCP-201ENST00000459650 1639 ntBASIC14.16□□□□□ -0.14
USP39Q53GS9 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
USP39Q53GS9 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
USP39Q53GS9 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC14.16□□□□□ -0.14
USP39Q53GS9 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.16□□□□□ -0.14
USP39Q53GS9 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
USP39Q53GS9 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
USP39Q53GS9 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC14.16□□□□□ -0.14
USP39Q53GS9 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC14.16□□□□□ -0.14
USP39Q53GS9 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USP39Q53GS9 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC14.16□□□□□ -0.14
USP39Q53GS9 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
USP39Q53GS9 AC026470.1-201ENST00000478038 846 ntBASIC14.16□□□□□ -0.14
USP39Q53GS9 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC14.16□□□□□ -0.14
USP39Q53GS9 ALG1L3P-201ENST00000503331 765 ntBASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms