Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC139712.1-201ENST00000378256 1875 ntBASIC13.46□□□□□ -0.25
COL28A1Q2UY09 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 AC018638.5-201ENST00000450885 754 ntBASIC13.46□□□□□ -0.25
COL28A1Q2UY09 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 SIGLEC22P-201ENST00000599104 714 ntBASIC13.46□□□□□ -0.25
COL28A1Q2UY09 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 AC080013.5-201ENST00000607044 679 ntBASIC13.46□□□□□ -0.25
COL28A1Q2UY09 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
COL28A1Q2UY09 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 PYY2-201ENST00000315776 282 ntBASIC13.45□□□□□ -0.26
COL28A1Q2UY09 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 EEF1DP5-201ENST00000431410 772 ntBASIC13.45□□□□□ -0.26
COL28A1Q2UY09 MAGEA7P-201ENST00000436482 942 ntBASIC13.45□□□□□ -0.26
COL28A1Q2UY09 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 CTBP2P6-201ENST00000526402 1229 ntBASIC13.45□□□□□ -0.26
COL28A1Q2UY09 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 KNOP1P1-201ENST00000542108 989 ntBASIC13.45□□□□□ -0.26
COL28A1Q2UY09 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 AC090510.3-201ENST00000615831 821 ntBASIC13.45□□□□□ -0.26
COL28A1Q2UY09 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms