Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC14.59□□□□□ -0.07
HDAC4P56524 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC14.59□□□□□ -0.07
HDAC4P56524 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC14.59□□□□□ -0.07
HDAC4P56524 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC14.59□□□□□ -0.07
HDAC4P56524 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC14.59□□□□□ -0.07
HDAC4P56524 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC14.59□□□□□ -0.07
HDAC4P56524 MIR3677-201ENST00000578964 60 ntBASIC14.59□□□□□ -0.07
HDAC4P56524 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
HDAC4P56524 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC14.59□□□□□ -0.07
HDAC4P56524 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC14.59□□□□□ -0.07
HDAC4P56524 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 LINC00638-201ENST00000555578 2518 ntBASIC14.59□□□□□ -0.07
HDAC4P56524 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC14.59□□□□□ -0.07
HDAC4P56524 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC14.59□□□□□ -0.07
HDAC4P56524 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC14.59□□□□□ -0.07
HDAC4P56524 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
HDAC4P56524 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC14.59□□□□□ -0.07
HDAC4P56524 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
HDAC4P56524 FAM90A2P-201ENST00000511144 1395 ntBASIC14.59□□□□□ -0.07
HDAC4P56524 FAM90A25P-201ENST00000528404 1395 ntBASIC14.59□□□□□ -0.07
HDAC4P56524 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC14.59□□□□□ -0.07
HDAC4P56524 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
HDAC4P56524 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC14.58□□□□□ -0.07
HDAC4P56524 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
HDAC4P56524 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC14.58□□□□□ -0.07
HDAC4P56524 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
HDAC4P56524 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
HDAC4P56524 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC14.58□□□□□ -0.08
HDAC4P56524 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC14.58□□□□□ -0.08
HDAC4P56524 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC14.58□□□□□ -0.08
HDAC4P56524 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 RN7SL67P-201ENST00000492147 296 ntBASIC14.58□□□□□ -0.08
HDAC4P56524 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC14.58□□□□□ -0.08
HDAC4P56524 AC095040.1-201ENST00000513286 675 ntBASIC14.58□□□□□ -0.08
HDAC4P56524 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC14.58□□□□□ -0.08
HDAC4P56524 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC14.58□□□□□ -0.08
HDAC4P56524 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.58□□□□□ -0.08
HDAC4P56524 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
HDAC4P56524 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC14.58□□□□□ -0.08
HDAC4P56524 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC14.58□□□□□ -0.08
HDAC4P56524 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC14.58□□□□□ -0.08
HDAC4P56524 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
HDAC4P56524 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.58□□□□□ -0.08
HDAC4P56524 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 AC020917.4-201ENST00000623994 1999 ntBASIC14.58□□□□□ -0.08
HDAC4P56524 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
HDAC4P56524 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC14.58□□□□□ -0.08
HDAC4P56524 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC14.58□□□□□ -0.08
HDAC4P56524 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HDAC4P56524 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
HDAC4P56524 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC14.57□□□□□ -0.08
HDAC4P56524 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
HDAC4P56524 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
HDAC4P56524 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HDAC4P56524 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
HDAC4P56524 TBC1D27-202ENST00000424239 1573 ntBASIC14.57□□□□□ -0.08
HDAC4P56524 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HDAC4P56524 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms