Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.19□□□□□ -0.14
USP39Q53GS9 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
USP39Q53GS9 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 SURF4-203ENST00000371991 715 ntTSL 3 BASIC14.19□□□□□ -0.14
USP39Q53GS9 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC14.19□□□□□ -0.14
USP39Q53GS9 AC108734.2-201ENST00000420887 1069 ntBASIC14.19□□□□□ -0.14
USP39Q53GS9 AL161932.2-201ENST00000435436 679 ntBASIC14.19□□□□□ -0.14
USP39Q53GS9 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC14.19□□□□□ -0.14
USP39Q53GS9 RN7SL788P-201ENST00000460504 316 ntBASIC14.19□□□□□ -0.14
USP39Q53GS9 AC063952.3-201ENST00000467756 308 ntBASIC14.19□□□□□ -0.14
USP39Q53GS9 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC14.19□□□□□ -0.14
USP39Q53GS9 AC093826.1-201ENST00000508655 993 ntBASIC14.19□□□□□ -0.14
USP39Q53GS9 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC14.19□□□□□ -0.14
USP39Q53GS9 AC005740.1-201ENST00000515639 522 ntBASIC14.19□□□□□ -0.14
USP39Q53GS9 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC14.19□□□□□ -0.14
USP39Q53GS9 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC14.19□□□□□ -0.14
USP39Q53GS9 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC14.19□□□□□ -0.14
USP39Q53GS9 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC14.19□□□□□ -0.14
USP39Q53GS9 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
USP39Q53GS9 AC012073.1-201ENST00000606114 1108 ntBASIC14.19□□□□□ -0.14
USP39Q53GS9 AP003392.6-201ENST00000607709 325 ntBASIC14.19□□□□□ -0.14
USP39Q53GS9 CICP16-201ENST00000502609 2813 ntBASIC14.19□□□□□ -0.14
USP39Q53GS9 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.19□□□□□ -0.14
USP39Q53GS9 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 CCT8L1P-201ENST00000465400 1674 ntBASIC14.19□□□□□ -0.14
USP39Q53GS9 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC14.19□□□□□ -0.14
USP39Q53GS9 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC14.19□□□□□ -0.14
USP39Q53GS9 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC14.19□□□□□ -0.14
USP39Q53GS9 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.19□□□□□ -0.14
USP39Q53GS9 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USP39Q53GS9 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
USP39Q53GS9 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.19□□□□□ -0.14
USP39Q53GS9 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.18□□□□□ -0.14
USP39Q53GS9 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.18□□□□□ -0.14
USP39Q53GS9 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
USP39Q53GS9 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.18□□□□□ -0.14
USP39Q53GS9 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.18□□□□□ -0.14
USP39Q53GS9 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
USP39Q53GS9 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
USP39Q53GS9 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.18□□□□□ -0.14
USP39Q53GS9 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
USP39Q53GS9 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
USP39Q53GS9 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
USP39Q53GS9 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.18□□□□□ -0.14
USP39Q53GS9 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.18□□□□□ -0.14
USP39Q53GS9 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
USP39Q53GS9 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
USP39Q53GS9 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 OR7E115P-201ENST00000382617 1024 ntBASIC14.18□□□□□ -0.14
USP39Q53GS9 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
USP39Q53GS9 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC14.18□□□□□ -0.14
USP39Q53GS9 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC14.18□□□□□ -0.14
USP39Q53GS9 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC14.18□□□□□ -0.14
USP39Q53GS9 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC14.18□□□□□ -0.14
USP39Q53GS9 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC14.18□□□□□ -0.14
USP39Q53GS9 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USP39Q53GS9 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC14.18□□□□□ -0.14
USP39Q53GS9 TREHP1-201ENST00000531328 465 ntBASIC14.18□□□□□ -0.14
USP39Q53GS9 NAA40-205ENST00000539656 577 ntTSL 4 BASIC14.18□□□□□ -0.14
USP39Q53GS9 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms