Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 FAU-201ENST00000279259 461 ntTSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 CASP2-203ENST00000392925 616 ntTSL 3 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 CELP-201ENST00000411440 1249 ntTSL 5 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 AC027612.2-202ENST00000445955 1199 ntBASIC13.48□□□□□ -0.25
COL28A1Q2UY09 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 TPT1P11-201ENST00000458482 498 ntBASIC13.48□□□□□ -0.25
COL28A1Q2UY09 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 AC092862.1-201ENST00000541534 533 ntBASIC13.48□□□□□ -0.25
COL28A1Q2UY09 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 APOC1-209ENST00000592885 562 ntTSL 3 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC13.48□□□□□ -0.25
COL28A1Q2UY09 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.48□□□□□ -0.25
COL28A1Q2UY09 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 DKKL1P1-201ENST00000400550 698 ntBASIC13.47□□□□□ -0.25
COL28A1Q2UY09 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 AC092570.1-201ENST00000414446 469 ntBASIC13.47□□□□□ -0.25
COL28A1Q2UY09 AC053503.3-201ENST00000448375 114 ntBASIC13.47□□□□□ -0.25
COL28A1Q2UY09 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 AC142086.5-202ENST00000562500 217 ntBASIC13.47□□□□□ -0.25
COL28A1Q2UY09 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 AC009145.4-201ENST00000625119 1294 ntBASIC13.47□□□□□ -0.25
COL28A1Q2UY09 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC13.47□□□□□ -0.25
COL28A1Q2UY09 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL28A1Q2UY09 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms