Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 SYT6-210ENST00000641643 1587 ntBASIC26.47■■□□□ 1.83
RNF41Q9H4P4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC26.47■■□□□ 1.83
RNF41Q9H4P4 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC26.47■■□□□ 1.83
RNF41Q9H4P4 SF1-220ENST00000626028 704 ntTSL 2 BASIC26.47■■□□□ 1.83
RNF41Q9H4P4 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
RNF41Q9H4P4 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
RNF41Q9H4P4 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
RNF41Q9H4P4 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
RNF41Q9H4P4 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC26.46■■□□□ 1.83
RNF41Q9H4P4 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
RNF41Q9H4P4 AC006455.2-201ENST00000429931 906 ntBASIC26.46■■□□□ 1.83
RNF41Q9H4P4 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
RNF41Q9H4P4 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
RNF41Q9H4P4 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
RNF41Q9H4P4 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
RNF41Q9H4P4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC26.45■■□□□ 1.82
RNF41Q9H4P4 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC26.45■■□□□ 1.82
RNF41Q9H4P4 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC26.45■■□□□ 1.82
RNF41Q9H4P4 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC26.45■■□□□ 1.82
RNF41Q9H4P4 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC26.45■■□□□ 1.82
RNF41Q9H4P4 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC26.45■■□□□ 1.82
RNF41Q9H4P4 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
RNF41Q9H4P4 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
RNF41Q9H4P4 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC26.44■■□□□ 1.82
RNF41Q9H4P4 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
RNF41Q9H4P4 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC26.44■■□□□ 1.82
RNF41Q9H4P4 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC26.44■■□□□ 1.82
RNF41Q9H4P4 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
RNF41Q9H4P4 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC26.44■■□□□ 1.82
RNF41Q9H4P4 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC26.44■■□□□ 1.82
RNF41Q9H4P4 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC26.44■■□□□ 1.82
RNF41Q9H4P4 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
RNF41Q9H4P4 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC26.43■■□□□ 1.82
RNF41Q9H4P4 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC26.43■■□□□ 1.82
RNF41Q9H4P4 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
RNF41Q9H4P4 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC26.43■■□□□ 1.82
RNF41Q9H4P4 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
RNF41Q9H4P4 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC26.43■■□□□ 1.82
RNF41Q9H4P4 AC096631.2-201ENST00000436136 790 ntBASIC26.43■■□□□ 1.82
RNF41Q9H4P4 AL138724.1-201ENST00000606771 1088 ntBASIC26.43■■□□□ 1.82
RNF41Q9H4P4 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC26.43■■□□□ 1.82
RNF41Q9H4P4 AL353803.4-201ENST00000565882 1934 ntBASIC26.43■■□□□ 1.82
RNF41Q9H4P4 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC26.42■■□□□ 1.82
RNF41Q9H4P4 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RNF41Q9H4P4 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RNF41Q9H4P4 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
RNF41Q9H4P4 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
RNF41Q9H4P4 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RNF41Q9H4P4 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC26.42■■□□□ 1.82
RNF41Q9H4P4 UNC93B3-201ENST00000308076 687 ntBASIC26.42■■□□□ 1.82
RNF41Q9H4P4 GTSE1-AS1-202ENST00000623117 1518 ntBASIC26.42■■□□□ 1.82
RNF41Q9H4P4 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
RNF41Q9H4P4 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC26.42■■□□□ 1.82
RNF41Q9H4P4 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RNF41Q9H4P4 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RNF41Q9H4P4 PKM-204ENST00000449901 2526 ntTSL 2 BASIC26.41■■□□□ 1.82
RNF41Q9H4P4 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
RNF41Q9H4P4 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
RNF41Q9H4P4 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
RNF41Q9H4P4 SERBP1P1-201ENST00000396021 1160 ntBASIC26.41■■□□□ 1.82
RNF41Q9H4P4 PTCHD3P2-201ENST00000424937 1205 ntBASIC26.41■■□□□ 1.82
RNF41Q9H4P4 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.41■■□□□ 1.82
RNF41Q9H4P4 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
RNF41Q9H4P4 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC26.41■■□□□ 1.82
RNF41Q9H4P4 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC26.41■■□□□ 1.82
RNF41Q9H4P4 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
RNF41Q9H4P4 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
RNF41Q9H4P4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
RNF41Q9H4P4 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
RNF41Q9H4P4 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC26.4■■□□□ 1.82
RNF41Q9H4P4 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
RNF41Q9H4P4 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
RNF41Q9H4P4 MIR3181-201ENST00000578512 73 ntBASIC26.4■■□□□ 1.82
RNF41Q9H4P4 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC26.4■■□□□ 1.82
RNF41Q9H4P4 pRNA.6-201ENST00000610482 90 ntBASIC26.4■■□□□ 1.82
RNF41Q9H4P4 pRNA.5-201ENST00000612139 90 ntBASIC26.4■■□□□ 1.82
RNF41Q9H4P4 pRNA.11-201ENST00000618423 90 ntBASIC26.4■■□□□ 1.82
RNF41Q9H4P4 pRNA.13-201ENST00000619112 90 ntBASIC26.4■■□□□ 1.82
RNF41Q9H4P4 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
RNF41Q9H4P4 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
RNF41Q9H4P4 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
RNF41Q9H4P4 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC26.39■■□□□ 1.82
RNF41Q9H4P4 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
RNF41Q9H4P4 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
RNF41Q9H4P4 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC26.39■■□□□ 1.82
RNF41Q9H4P4 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
RNF41Q9H4P4 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
RNF41Q9H4P4 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC26.39■■□□□ 1.82
RNF41Q9H4P4 AL499627.2-201ENST00000606283 725 ntBASIC26.39■■□□□ 1.82
RNF41Q9H4P4 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.82
RNF41Q9H4P4 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.81
RNF41Q9H4P4 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
RNF41Q9H4P4 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC26.39■■□□□ 1.81
RNF41Q9H4P4 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC26.39■■□□□ 1.81
RNF41Q9H4P4 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
RNF41Q9H4P4 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
RNF41Q9H4P4 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
RNF41Q9H4P4 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
RNF41Q9H4P4 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC26.38■■□□□ 1.81
RNF41Q9H4P4 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC26.38■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms