Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CPNE1Q99829 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
CPNE1Q99829 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CPNE1Q99829 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
CPNE1Q99829 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CPNE1Q99829 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CPNE1Q99829 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CPNE1Q99829 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CPNE1Q99829 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CPNE1Q99829 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC22.39■■□□□ 1.17
CPNE1Q99829 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.38■■□□□ 1.17
CPNE1Q99829 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.38■■□□□ 1.17
CPNE1Q99829 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CPNE1Q99829 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CPNE1Q99829 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CPNE1Q99829 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CPNE1Q99829 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CPNE1Q99829 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CPNE1Q99829 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CPNE1Q99829 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC22.38■■□□□ 1.17
CPNE1Q99829 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
CPNE1Q99829 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC22.38■■□□□ 1.17
CPNE1Q99829 STK25-234ENST00000535007 2459 ntTSL 2 BASIC22.38■■□□□ 1.17
CPNE1Q99829 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CPNE1Q99829 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CPNE1Q99829 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CPNE1Q99829 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.37■■□□□ 1.17
CPNE1Q99829 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.37■■□□□ 1.17
CPNE1Q99829 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
CPNE1Q99829 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
CPNE1Q99829 AL033527.3-201ENST00000566366 1196 ntBASIC22.37■■□□□ 1.17
CPNE1Q99829 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
CPNE1Q99829 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CPNE1Q99829 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CPNE1Q99829 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CPNE1Q99829 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC22.36■■□□□ 1.17
CPNE1Q99829 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
CPNE1Q99829 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC22.36■■□□□ 1.17
CPNE1Q99829 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.36■■□□□ 1.17
CPNE1Q99829 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CPNE1Q99829 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC22.36■■□□□ 1.17
CPNE1Q99829 YBX1P4-201ENST00000392794 808 ntBASIC22.36■■□□□ 1.17
CPNE1Q99829 TK2-202ENST00000417693 1046 ntTSL 2 BASIC22.36■■□□□ 1.17
CPNE1Q99829 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC22.36■■□□□ 1.17
CPNE1Q99829 AC103724.3-201ENST00000564481 992 ntBASIC22.36■■□□□ 1.17
CPNE1Q99829 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CPNE1Q99829 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.36■■□□□ 1.17
CPNE1Q99829 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
CPNE1Q99829 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CPNE1Q99829 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CPNE1Q99829 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
CPNE1Q99829 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CPNE1Q99829 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22.36■■□□□ 1.17
CPNE1Q99829 LSR-203ENST00000360798 1963 ntTSL 2 BASIC22.36■■□□□ 1.17
CPNE1Q99829 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CPNE1Q99829 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC22.35■■□□□ 1.17
CPNE1Q99829 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CPNE1Q99829 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
CPNE1Q99829 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CPNE1Q99829 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CPNE1Q99829 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CPNE1Q99829 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CPNE1Q99829 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.34■■□□□ 1.17
CPNE1Q99829 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.34■■□□□ 1.17
CPNE1Q99829 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
CPNE1Q99829 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
CPNE1Q99829 AC137630.3-201ENST00000607245 391 ntBASIC22.34■■□□□ 1.17
CPNE1Q99829 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CPNE1Q99829 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CPNE1Q99829 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CPNE1Q99829 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
CPNE1Q99829 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CPNE1Q99829 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CPNE1Q99829 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
CPNE1Q99829 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CPNE1Q99829 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CPNE1Q99829 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CPNE1Q99829 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC22.33■■□□□ 1.17
CPNE1Q99829 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
CPNE1Q99829 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CPNE1Q99829 AC127496.7-201ENST00000625110 1798 ntBASIC22.33■■□□□ 1.17
CPNE1Q99829 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CPNE1Q99829 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
CPNE1Q99829 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC22.33■■□□□ 1.17
CPNE1Q99829 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC22.33■■□□□ 1.17
CPNE1Q99829 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC22.33■■□□□ 1.17
CPNE1Q99829 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.33■■□□□ 1.17
CPNE1Q99829 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
CPNE1Q99829 AC242852.2-201ENST00000615738 1807 ntBASIC22.33■■□□□ 1.16
CPNE1Q99829 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
CPNE1Q99829 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC22.33■■□□□ 1.16
CPNE1Q99829 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.33■■□□□ 1.16
CPNE1Q99829 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CPNE1Q99829 KRT8P33-201ENST00000508125 1423 ntBASIC22.32■■□□□ 1.16
CPNE1Q99829 AC144652.1-201ENST00000609974 1624 ntBASIC22.32■■□□□ 1.16
CPNE1Q99829 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CPNE1Q99829 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC22.32■■□□□ 1.16
CPNE1Q99829 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CPNE1Q99829 TK2-216ENST00000564917 1156 ntTSL 3 BASIC22.32■■□□□ 1.16
CPNE1Q99829 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms