Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
VPS52Q8N1B4 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
VPS52Q8N1B4 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
VPS52Q8N1B4 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC24.21■■□□□ 1.47
VPS52Q8N1B4 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC24.21■■□□□ 1.47
VPS52Q8N1B4 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
VPS52Q8N1B4 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
VPS52Q8N1B4 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC24.21■■□□□ 1.47
VPS52Q8N1B4 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC24.21■■□□□ 1.47
VPS52Q8N1B4 MPST-208ENST00000628507 698 ntTSL 5 BASIC24.21■■□□□ 1.47
VPS52Q8N1B4 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
VPS52Q8N1B4 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
VPS52Q8N1B4 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.47
VPS52Q8N1B4 GRAMD4P2-201ENST00000423297 1097 ntBASIC24.2■■□□□ 1.46
VPS52Q8N1B4 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC24.2■■□□□ 1.46
VPS52Q8N1B4 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
VPS52Q8N1B4 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
VPS52Q8N1B4 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
VPS52Q8N1B4 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
VPS52Q8N1B4 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC24.19■■□□□ 1.46
VPS52Q8N1B4 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
VPS52Q8N1B4 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.19■■□□□ 1.46
VPS52Q8N1B4 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
VPS52Q8N1B4 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
VPS52Q8N1B4 PREB-202ENST00000406567 1910 ntTSL 5 BASIC24.18■■□□□ 1.46
VPS52Q8N1B4 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
VPS52Q8N1B4 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
VPS52Q8N1B4 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
VPS52Q8N1B4 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
VPS52Q8N1B4 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
VPS52Q8N1B4 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
VPS52Q8N1B4 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
VPS52Q8N1B4 GLI3-203ENST00000437480 451 ntTSL 2 BASIC24.17■■□□□ 1.46
VPS52Q8N1B4 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC24.17■■□□□ 1.46
VPS52Q8N1B4 pRNA.6-201ENST00000610482 90 ntBASIC24.17■■□□□ 1.46
VPS52Q8N1B4 pRNA.5-201ENST00000612139 90 ntBASIC24.17■■□□□ 1.46
VPS52Q8N1B4 pRNA.11-201ENST00000618423 90 ntBASIC24.17■■□□□ 1.46
VPS52Q8N1B4 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC24.17■■□□□ 1.46
VPS52Q8N1B4 pRNA.13-201ENST00000619112 90 ntBASIC24.17■■□□□ 1.46
VPS52Q8N1B4 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
VPS52Q8N1B4 EED-207ENST00000528180 1745 ntTSL 5 BASIC24.15■■□□□ 1.46
VPS52Q8N1B4 ALDH1A3-203ENST00000557963 1670 ntBASIC24.15■■□□□ 1.46
VPS52Q8N1B4 SNX3-202ENST00000349379 890 ntTSL 2 BASIC24.15■■□□□ 1.46
VPS52Q8N1B4 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC24.15■■□□□ 1.46
VPS52Q8N1B4 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC24.15■■□□□ 1.46
VPS52Q8N1B4 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC24.15■■□□□ 1.46
VPS52Q8N1B4 SP2-202ENST00000613139 908 ntTSL 5 BASIC24.15■■□□□ 1.46
VPS52Q8N1B4 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
VPS52Q8N1B4 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
VPS52Q8N1B4 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC24.14■■□□□ 1.46
VPS52Q8N1B4 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.46
VPS52Q8N1B4 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC24.14■■□□□ 1.46
VPS52Q8N1B4 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC24.14■■□□□ 1.46
VPS52Q8N1B4 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC24.14■■□□□ 1.46
VPS52Q8N1B4 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
VPS52Q8N1B4 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC24.14■■□□□ 1.45
VPS52Q8N1B4 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
VPS52Q8N1B4 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
VPS52Q8N1B4 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
VPS52Q8N1B4 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
VPS52Q8N1B4 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
VPS52Q8N1B4 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
VPS52Q8N1B4 AC126544.1-201ENST00000580842 1059 ntBASIC24.13■■□□□ 1.45
VPS52Q8N1B4 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
VPS52Q8N1B4 GTSE1-AS1-202ENST00000623117 1518 ntBASIC24.13■■□□□ 1.45
VPS52Q8N1B4 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
VPS52Q8N1B4 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC24.13■■□□□ 1.45
VPS52Q8N1B4 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
VPS52Q8N1B4 THRA-202ENST00000394121 2260 ntTSL 2 BASIC24.12■■□□□ 1.45
VPS52Q8N1B4 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
VPS52Q8N1B4 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
VPS52Q8N1B4 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
VPS52Q8N1B4 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
VPS52Q8N1B4 AK1-201ENST00000223836 736 ntTSL 3 BASIC24.11■■□□□ 1.45
VPS52Q8N1B4 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC24.11■■□□□ 1.45
VPS52Q8N1B4 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
VPS52Q8N1B4 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
VPS52Q8N1B4 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
VPS52Q8N1B4 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
VPS52Q8N1B4 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC24.1■■□□□ 1.45
VPS52Q8N1B4 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
VPS52Q8N1B4 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
VPS52Q8N1B4 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC24.1■■□□□ 1.45
VPS52Q8N1B4 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
VPS52Q8N1B4 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC24.1■■□□□ 1.45
VPS52Q8N1B4 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms