Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.99■■□□□ 1.11
VRK3Q8IV63 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
VRK3Q8IV63 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
VRK3Q8IV63 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
VRK3Q8IV63 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.98■■□□□ 1.11
VRK3Q8IV63 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
VRK3Q8IV63 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
VRK3Q8IV63 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.98■■□□□ 1.11
VRK3Q8IV63 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.98■■□□□ 1.11
VRK3Q8IV63 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.98■■□□□ 1.11
VRK3Q8IV63 AC144652.1-201ENST00000609974 1624 ntBASIC21.98■■□□□ 1.11
VRK3Q8IV63 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
VRK3Q8IV63 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VRK3Q8IV63 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VRK3Q8IV63 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
VRK3Q8IV63 AC131281.2-201ENST00000520478 145 ntBASIC21.97■■□□□ 1.11
VRK3Q8IV63 MIR4466-201ENST00000606121 54 ntBASIC21.97■■□□□ 1.11
VRK3Q8IV63 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
VRK3Q8IV63 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VRK3Q8IV63 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VRK3Q8IV63 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
VRK3Q8IV63 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.97■■□□□ 1.11
VRK3Q8IV63 C9orf163-202ENST00000624034 2573 ntBASIC21.96■■□□□ 1.11
VRK3Q8IV63 AL353803.4-201ENST00000565882 1934 ntBASIC21.96■■□□□ 1.11
VRK3Q8IV63 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.96■■□□□ 1.11
VRK3Q8IV63 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
VRK3Q8IV63 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.96■■□□□ 1.11
VRK3Q8IV63 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
VRK3Q8IV63 DUSP8P3-201ENST00000399571 1760 ntBASIC21.96■■□□□ 1.11
VRK3Q8IV63 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.96■■□□□ 1.11
VRK3Q8IV63 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VRK3Q8IV63 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.95■■□□□ 1.1
VRK3Q8IV63 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VRK3Q8IV63 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.95■■□□□ 1.1
VRK3Q8IV63 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
VRK3Q8IV63 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.95■■□□□ 1.1
VRK3Q8IV63 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.95■■□□□ 1.1
VRK3Q8IV63 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VRK3Q8IV63 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VRK3Q8IV63 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VRK3Q8IV63 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.94■■□□□ 1.1
VRK3Q8IV63 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VRK3Q8IV63 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VRK3Q8IV63 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
VRK3Q8IV63 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VRK3Q8IV63 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VRK3Q8IV63 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.94■■□□□ 1.1
VRK3Q8IV63 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.94■■□□□ 1.1
VRK3Q8IV63 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VRK3Q8IV63 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VRK3Q8IV63 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VRK3Q8IV63 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.93■■□□□ 1.1
VRK3Q8IV63 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.93■■□□□ 1.1
VRK3Q8IV63 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.93■■□□□ 1.1
VRK3Q8IV63 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VRK3Q8IV63 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VRK3Q8IV63 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.92■■□□□ 1.1
VRK3Q8IV63 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.92■■□□□ 1.1
VRK3Q8IV63 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VRK3Q8IV63 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.92■■□□□ 1.1
VRK3Q8IV63 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VRK3Q8IV63 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VRK3Q8IV63 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.92■■□□□ 1.1
VRK3Q8IV63 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VRK3Q8IV63 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
VRK3Q8IV63 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
VRK3Q8IV63 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
VRK3Q8IV63 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
VRK3Q8IV63 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VRK3Q8IV63 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.91■■□□□ 1.1
VRK3Q8IV63 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VRK3Q8IV63 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
VRK3Q8IV63 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.91■■□□□ 1.1
VRK3Q8IV63 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
VRK3Q8IV63 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VRK3Q8IV63 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VRK3Q8IV63 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
VRK3Q8IV63 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
VRK3Q8IV63 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VRK3Q8IV63 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.9■■□□□ 1.1
VRK3Q8IV63 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.9■■□□□ 1.1
VRK3Q8IV63 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VRK3Q8IV63 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VRK3Q8IV63 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
VRK3Q8IV63 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
VRK3Q8IV63 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
VRK3Q8IV63 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.9■■□□□ 1.1
VRK3Q8IV63 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VRK3Q8IV63 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.89■■□□□ 1.1
VRK3Q8IV63 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
VRK3Q8IV63 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VRK3Q8IV63 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.89■■□□□ 1.09
VRK3Q8IV63 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
VRK3Q8IV63 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VRK3Q8IV63 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
VRK3Q8IV63 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
VRK3Q8IV63 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
VRK3Q8IV63 LINC01529-204ENST00000636474 1715 ntBASIC21.89■■□□□ 1.09
VRK3Q8IV63 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VRK3Q8IV63 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.89■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms