Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC40Q4G0X9 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC40Q4G0X9 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC24.59■■□□□ 1.53
CCDC40Q4G0X9 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
CCDC40Q4G0X9 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC40Q4G0X9 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
CCDC40Q4G0X9 MIR6722-201ENST00000617286 78 ntBASIC24.59■■□□□ 1.53
CCDC40Q4G0X9 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC40Q4G0X9 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC24.59■■□□□ 1.53
CCDC40Q4G0X9 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC40Q4G0X9 GALC-202ENST00000393568 2054 ntTSL 2 BASIC24.58■■□□□ 1.53
CCDC40Q4G0X9 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC40Q4G0X9 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC24.58■■□□□ 1.53
CCDC40Q4G0X9 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC24.58■■□□□ 1.53
CCDC40Q4G0X9 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC24.58■■□□□ 1.53
CCDC40Q4G0X9 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC24.58■■□□□ 1.53
CCDC40Q4G0X9 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC24.58■■□□□ 1.53
CCDC40Q4G0X9 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC40Q4G0X9 AC005703.6-201ENST00000623265 1329 ntBASIC24.58■■□□□ 1.52
CCDC40Q4G0X9 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC24.58■■□□□ 1.52
CCDC40Q4G0X9 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
CCDC40Q4G0X9 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC24.58■■□□□ 1.52
CCDC40Q4G0X9 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC24.58■■□□□ 1.52
CCDC40Q4G0X9 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC24.58■■□□□ 1.52
CCDC40Q4G0X9 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC24.57■■□□□ 1.52
CCDC40Q4G0X9 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC40Q4G0X9 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC40Q4G0X9 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC24.57■■□□□ 1.52
CCDC40Q4G0X9 Z92544.1-202ENST00000571933 1220 ntBASIC24.57■■□□□ 1.52
CCDC40Q4G0X9 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC24.57■■□□□ 1.52
CCDC40Q4G0X9 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC40Q4G0X9 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC24.57■■□□□ 1.52
CCDC40Q4G0X9 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC40Q4G0X9 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC24.57■■□□□ 1.52
CCDC40Q4G0X9 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC40Q4G0X9 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC40Q4G0X9 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC40Q4G0X9 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC40Q4G0X9 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC40Q4G0X9 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
CCDC40Q4G0X9 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC40Q4G0X9 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
CCDC40Q4G0X9 AC092028.1-203ENST00000608262 953 ntBASIC24.56■■□□□ 1.52
CCDC40Q4G0X9 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC40Q4G0X9 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC24.56■■□□□ 1.52
CCDC40Q4G0X9 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC24.56■■□□□ 1.52
CCDC40Q4G0X9 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC40Q4G0X9 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC40Q4G0X9 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC40Q4G0X9 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC40Q4G0X9 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
CCDC40Q4G0X9 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC40Q4G0X9 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC24.55■■□□□ 1.52
CCDC40Q4G0X9 MIR4787-201ENST00000607364 84 ntBASIC24.55■■□□□ 1.52
CCDC40Q4G0X9 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC40Q4G0X9 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC40Q4G0X9 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC24.55■■□□□ 1.52
CCDC40Q4G0X9 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC24.55■■□□□ 1.52
CCDC40Q4G0X9 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC40Q4G0X9 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC40Q4G0X9 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
CCDC40Q4G0X9 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC40Q4G0X9 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC40Q4G0X9 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
CCDC40Q4G0X9 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC24.54■■□□□ 1.52
CCDC40Q4G0X9 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC24.54■■□□□ 1.52
CCDC40Q4G0X9 AC239859.2-201ENST00000444165 318 ntBASIC24.54■■□□□ 1.52
CCDC40Q4G0X9 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC24.54■■□□□ 1.52
CCDC40Q4G0X9 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC40Q4G0X9 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC40Q4G0X9 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC40Q4G0X9 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC24.53■■□□□ 1.52
CCDC40Q4G0X9 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
CCDC40Q4G0X9 C1orf229-201ENST00000623686 2258 ntBASIC24.53■■□□□ 1.52
CCDC40Q4G0X9 AC009299.2-201ENST00000482477 511 ntBASIC24.53■■□□□ 1.52
CCDC40Q4G0X9 AL451085.2-201ENST00000605085 799 ntBASIC24.53■■□□□ 1.52
CCDC40Q4G0X9 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC24.53■■□□□ 1.52
CCDC40Q4G0X9 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC40Q4G0X9 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
CCDC40Q4G0X9 AL353803.4-201ENST00000565882 1934 ntBASIC24.53■■□□□ 1.52
CCDC40Q4G0X9 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC24.53■■□□□ 1.52
CCDC40Q4G0X9 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC40Q4G0X9 CLTA-206ENST00000466396 695 ntTSL 2 BASIC24.52■■□□□ 1.52
CCDC40Q4G0X9 MTDHP2-201ENST00000601468 714 ntBASIC24.52■■□□□ 1.52
CCDC40Q4G0X9 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC40Q4G0X9 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC40Q4G0X9 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC24.52■■□□□ 1.52
CCDC40Q4G0X9 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC40Q4G0X9 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC24.51■■□□□ 1.51
CCDC40Q4G0X9 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC24.51■■□□□ 1.51
CCDC40Q4G0X9 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC24.51■■□□□ 1.51
CCDC40Q4G0X9 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC40Q4G0X9 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC24.51■■□□□ 1.51
CCDC40Q4G0X9 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
CCDC40Q4G0X9 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC40Q4G0X9 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC40Q4G0X9 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
CCDC40Q4G0X9 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC24.5■■□□□ 1.51
CCDC40Q4G0X9 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC24.5■■□□□ 1.51
CCDC40Q4G0X9 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms