Protein–RNA interactions for Protein: O95716

RAB3D, Ras-related protein Rab-3D, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3DO95716 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
RAB3DO95716 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
RAB3DO95716 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.02■□□□□ 0.63
RAB3DO95716 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.01■□□□□ 0.63
RAB3DO95716 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.01■□□□□ 0.63
RAB3DO95716 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
RAB3DO95716 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RAB3DO95716 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RAB3DO95716 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
RAB3DO95716 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
RAB3DO95716 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RAB3DO95716 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.01■□□□□ 0.63
RAB3DO95716 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RAB3DO95716 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.01■□□□□ 0.63
RAB3DO95716 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.01■□□□□ 0.63
RAB3DO95716 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.01■□□□□ 0.63
RAB3DO95716 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19■□□□□ 0.63
RAB3DO95716 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 C11orf96-202ENST00000528572 1834 ntBASIC19■□□□□ 0.63
RAB3DO95716 AC092053.2-201ENST00000640557 1818 ntBASIC19■□□□□ 0.63
RAB3DO95716 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19■□□□□ 0.63
RAB3DO95716 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
RAB3DO95716 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
RAB3DO95716 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
RAB3DO95716 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
RAB3DO95716 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAB3DO95716 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
RAB3DO95716 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RAB3DO95716 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RAB3DO95716 MACF1-219ENST00000484793 834 ntTSL 2 BASIC18.99■□□□□ 0.63
RAB3DO95716 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
RAB3DO95716 RAP2CP1-202ENST00000605179 643 ntBASIC18.99■□□□□ 0.63
RAB3DO95716 AC016575.1-201ENST00000607026 382 ntBASIC18.99■□□□□ 0.63
RAB3DO95716 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RAB3DO95716 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.99■□□□□ 0.63
RAB3DO95716 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
RAB3DO95716 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RAB3DO95716 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RAB3DO95716 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RAB3DO95716 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RAB3DO95716 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC18.98■□□□□ 0.63
RAB3DO95716 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RAB3DO95716 GFER-205ENST00000569451 517 ntTSL 5 BASIC18.98■□□□□ 0.63
RAB3DO95716 AC026202.3-201ENST00000600805 1127 ntBASIC18.98■□□□□ 0.63
RAB3DO95716 AC007029.1-201ENST00000604183 313 ntBASIC18.98■□□□□ 0.63
RAB3DO95716 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RAB3DO95716 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RAB3DO95716 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RAB3DO95716 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
RAB3DO95716 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RAB3DO95716 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
RAB3DO95716 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAB3DO95716 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAB3DO95716 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
RAB3DO95716 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAB3DO95716 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
RAB3DO95716 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.97■□□□□ 0.63
RAB3DO95716 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAB3DO95716 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAB3DO95716 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAB3DO95716 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAB3DO95716 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAB3DO95716 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RAB3DO95716 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC18.97■□□□□ 0.63
RAB3DO95716 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RAB3DO95716 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
RAB3DO95716 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
RAB3DO95716 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
RAB3DO95716 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 ALDH1A3-203ENST00000557963 1670 ntBASIC18.96■□□□□ 0.63
RAB3DO95716 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
RAB3DO95716 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RAB3DO95716 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms