Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VPS4BO75351 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.9■■□□□ 1.1
VPS4BO75351 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.9■■□□□ 1.1
VPS4BO75351 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS4BO75351 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VPS4BO75351 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS4BO75351 AC131274.2-201ENST00000580697 1507 ntBASIC21.9■■□□□ 1.1
VPS4BO75351 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS4BO75351 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.9■■□□□ 1.1
VPS4BO75351 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.89■■□□□ 1.1
VPS4BO75351 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
VPS4BO75351 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS4BO75351 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.89■■□□□ 1.09
VPS4BO75351 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
VPS4BO75351 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS4BO75351 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
VPS4BO75351 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
VPS4BO75351 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
VPS4BO75351 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.09
VPS4BO75351 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS4BO75351 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VPS4BO75351 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS4BO75351 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS4BO75351 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.88■■□□□ 1.09
VPS4BO75351 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VPS4BO75351 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.88■■□□□ 1.09
VPS4BO75351 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS4BO75351 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VPS4BO75351 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS4BO75351 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.88■■□□□ 1.09
VPS4BO75351 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS4BO75351 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS4BO75351 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.87■■□□□ 1.09
VPS4BO75351 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS4BO75351 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS4BO75351 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.87■■□□□ 1.09
VPS4BO75351 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
VPS4BO75351 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.87■■□□□ 1.09
VPS4BO75351 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
VPS4BO75351 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.87■■□□□ 1.09
VPS4BO75351 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS4BO75351 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
VPS4BO75351 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS4BO75351 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS4BO75351 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
VPS4BO75351 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS4BO75351 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS4BO75351 C1orf229-201ENST00000623686 2258 ntBASIC21.86■■□□□ 1.09
VPS4BO75351 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS4BO75351 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS4BO75351 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS4BO75351 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS4BO75351 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS4BO75351 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS4BO75351 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS4BO75351 KRT18P24-201ENST00000344739 1156 ntBASIC21.86■■□□□ 1.09
VPS4BO75351 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.86■■□□□ 1.09
VPS4BO75351 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
VPS4BO75351 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.86■■□□□ 1.09
VPS4BO75351 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS4BO75351 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.85■■□□□ 1.09
VPS4BO75351 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS4BO75351 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VPS4BO75351 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VPS4BO75351 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VPS4BO75351 AL136116.3-201ENST00000402907 1138 ntBASIC21.85■■□□□ 1.09
VPS4BO75351 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.85■■□□□ 1.09
VPS4BO75351 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.85■■□□□ 1.09
VPS4BO75351 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.85■■□□□ 1.09
VPS4BO75351 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.85■■□□□ 1.09
VPS4BO75351 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.85■■□□□ 1.09
VPS4BO75351 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.85■■□□□ 1.09
VPS4BO75351 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
VPS4BO75351 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.84■■□□□ 1.09
VPS4BO75351 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS4BO75351 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS4BO75351 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS4BO75351 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS4BO75351 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS4BO75351 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS4BO75351 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS4BO75351 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS4BO75351 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS4BO75351 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS4BO75351 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
VPS4BO75351 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS4BO75351 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS4BO75351 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.83■■□□□ 1.09
VPS4BO75351 AC137630.3-201ENST00000607245 391 ntBASIC21.83■■□□□ 1.09
VPS4BO75351 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.83■■□□□ 1.09
VPS4BO75351 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.83■■□□□ 1.09
VPS4BO75351 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
VPS4BO75351 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS4BO75351 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS4BO75351 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.82■■□□□ 1.08
VPS4BO75351 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS4BO75351 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
VPS4BO75351 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.82■■□□□ 1.08
VPS4BO75351 AC131281.2-201ENST00000520478 145 ntBASIC21.82■■□□□ 1.08
VPS4BO75351 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms