Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC53.96■■■■■ 6.23
SHROOM4Q9ULL8 MIR7108-201ENST00000614319 87 ntBASIC53.96■■■■■ 6.23
SHROOM4Q9ULL8 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC53.93■■■■■ 6.22
SHROOM4Q9ULL8 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC53.93■■■■■ 6.22
SHROOM4Q9ULL8 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC53.92■■■■■ 6.22
SHROOM4Q9ULL8 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC53.92■■■■■ 6.22
SHROOM4Q9ULL8 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC53.92■■■■■ 6.22
SHROOM4Q9ULL8 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC53.91■■■■■ 6.22
SHROOM4Q9ULL8 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC53.88■■■■■ 6.22
SHROOM4Q9ULL8 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC53.87■■■■■ 6.21
SHROOM4Q9ULL8 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC53.87■■■■■ 6.21
SHROOM4Q9ULL8 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC53.85■■■■■ 6.21
SHROOM4Q9ULL8 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC53.85■■■■■ 6.21
SHROOM4Q9ULL8 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC53.84■■■■■ 6.21
SHROOM4Q9ULL8 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC53.83■■■■■ 6.21
SHROOM4Q9ULL8 MLEC-202ENST00000412616 841 ntTSL 3 BASIC53.81■■■■■ 6.2
SHROOM4Q9ULL8 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC53.76■■■■■ 6.2
SHROOM4Q9ULL8 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC53.75■■■■■ 6.19
SHROOM4Q9ULL8 ABHD17AP4-201ENST00000411545 909 ntBASIC53.74■■■■■ 6.19
SHROOM4Q9ULL8 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC53.73■■■■■ 6.19
SHROOM4Q9ULL8 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC53.73■■■■■ 6.19
SHROOM4Q9ULL8 AL133380.1-201ENST00000506013 324 ntBASIC53.68■■■■■ 6.18
SHROOM4Q9ULL8 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC53.67■■■■■ 6.18
SHROOM4Q9ULL8 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC53.65■■■■■ 6.18
SHROOM4Q9ULL8 MIR3665-201ENST00000578708 105 ntBASIC53.65■■■■■ 6.18
SHROOM4Q9ULL8 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC53.61■■■■■ 6.17
SHROOM4Q9ULL8 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC53.6■■■■■ 6.17
SHROOM4Q9ULL8 HLA-V-202ENST00000446817 847 ntBASIC53.58■■■■■ 6.17
SHROOM4Q9ULL8 MVK-208ENST00000539696 608 ntTSL 5 BASIC53.58■■■■■ 6.17
SHROOM4Q9ULL8 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC53.55■■■■■ 6.16
SHROOM4Q9ULL8 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC53.54■■■■■ 6.16
SHROOM4Q9ULL8 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC53.54■■■■■ 6.16
SHROOM4Q9ULL8 AC087741.3-201ENST00000624270 1347 ntBASIC53.53■■■■■ 6.16
SHROOM4Q9ULL8 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC53.53■■■■■ 6.16
SHROOM4Q9ULL8 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC53.52■■■■■ 6.16
SHROOM4Q9ULL8 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC53.5■■■■■ 6.16
SHROOM4Q9ULL8 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC53.5■■■■■ 6.15
SHROOM4Q9ULL8 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC53.48■■■■■ 6.15
SHROOM4Q9ULL8 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC53.47■■■■■ 6.15
SHROOM4Q9ULL8 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC53.47■■■■■ 6.15
SHROOM4Q9ULL8 MBP-237ENST00000579129 1052 ntTSL 5 BASIC53.47■■■■■ 6.15
SHROOM4Q9ULL8 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC53.47■■■■■ 6.15
SHROOM4Q9ULL8 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC53.45■■■■■ 6.15
SHROOM4Q9ULL8 DUX4L28-201ENST00000623687 678 ntBASIC53.43■■■■■ 6.14
SHROOM4Q9ULL8 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC53.42■■■■■ 6.14
SHROOM4Q9ULL8 PVT1-219ENST00000523427 938 ntTSL 3 BASIC53.42■■■■■ 6.14
SHROOM4Q9ULL8 EBPL-202ENST00000378268 680 ntTSL 3 BASIC53.4■■■■■ 6.14
SHROOM4Q9ULL8 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC53.39■■■■■ 6.14
SHROOM4Q9ULL8 AC044849.2-201ENST00000606596 710 ntBASIC53.37■■■■■ 6.13
SHROOM4Q9ULL8 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC53.36■■■■■ 6.13
SHROOM4Q9ULL8 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC53.32■■■■■ 6.13
SHROOM4Q9ULL8 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC53.29■■■■■ 6.12
SHROOM4Q9ULL8 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC53.28■■■■■ 6.12
SHROOM4Q9ULL8 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC53.26■■■■■ 6.12
SHROOM4Q9ULL8 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC53.26■■■■■ 6.12
SHROOM4Q9ULL8 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC53.23■■■■■ 6.11
SHROOM4Q9ULL8 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC53.23■■■■■ 6.11
SHROOM4Q9ULL8 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC53.22■■■■■ 6.11
SHROOM4Q9ULL8 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC53.16■■■■■ 6.1
SHROOM4Q9ULL8 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC53.15■■■■■ 6.1
SHROOM4Q9ULL8 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC53.15■■■■■ 6.1
SHROOM4Q9ULL8 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC53.14■■■■■ 6.1
SHROOM4Q9ULL8 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC53.11■■■■■ 6.09
SHROOM4Q9ULL8 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC53.11■■■■■ 6.09
SHROOM4Q9ULL8 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC53.1■■■■■ 6.09
SHROOM4Q9ULL8 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC53.1■■■■■ 6.09
SHROOM4Q9ULL8 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC53.09■■■■■ 6.09
SHROOM4Q9ULL8 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC53.09■■■■■ 6.09
SHROOM4Q9ULL8 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC53.09■■■■■ 6.09
SHROOM4Q9ULL8 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC53.09■■■■■ 6.09
SHROOM4Q9ULL8 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC53.06■■■■■ 6.08
SHROOM4Q9ULL8 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC53.05■■■■■ 6.08
SHROOM4Q9ULL8 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC53.05■■■■■ 6.08
SHROOM4Q9ULL8 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC53.03■■■■■ 6.08
SHROOM4Q9ULL8 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC53.03■■■■■ 6.08
SHROOM4Q9ULL8 CHML-205ENST00000638160 705 ntTSL 3 BASIC52.99■■■■■ 6.07
SHROOM4Q9ULL8 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC52.97■■■■■ 6.07
SHROOM4Q9ULL8 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC52.95■■■■■ 6.07
SHROOM4Q9ULL8 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC52.94■■■■■ 6.06
SHROOM4Q9ULL8 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC52.93■■■■■ 6.06
SHROOM4Q9ULL8 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC52.93■■■■■ 6.06
SHROOM4Q9ULL8 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC52.93■■■■■ 6.06
SHROOM4Q9ULL8 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC52.92■■■■■ 6.06
SHROOM4Q9ULL8 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC52.9■■■■■ 6.06
SHROOM4Q9ULL8 MIR762-201ENST00000390236 83 ntBASIC52.88■■■■■ 6.06
SHROOM4Q9ULL8 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC52.88■■■■■ 6.06
SHROOM4Q9ULL8 AC005559.1-201ENST00000589661 871 ntBASIC52.88■■■■■ 6.06
SHROOM4Q9ULL8 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC52.88■■■■■ 6.06
SHROOM4Q9ULL8 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC52.87■■■■■ 6.05
SHROOM4Q9ULL8 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC52.86■■■■■ 6.05
SHROOM4Q9ULL8 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC52.86■■■■■ 6.05
SHROOM4Q9ULL8 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC52.84■■■■■ 6.05
SHROOM4Q9ULL8 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC52.83■■■■■ 6.05
SHROOM4Q9ULL8 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC52.83■■■■■ 6.05
SHROOM4Q9ULL8 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC52.82■■■■■ 6.05
SHROOM4Q9ULL8 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC52.79■■■■■ 6.04
SHROOM4Q9ULL8 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC52.75■■■■■ 6.04
SHROOM4Q9ULL8 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC52.72■■■■■ 6.03
SHROOM4Q9ULL8 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC52.72■■■■■ 6.03
SHROOM4Q9ULL8 ZNRF2P2-203ENST00000454624 420 ntBASIC52.71■■■■■ 6.03
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms