Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
DDX4Q9NQI0 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC33.53■■■□□ 2.96
DDX4Q9NQI0 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC33.52■■■□□ 2.96
DDX4Q9NQI0 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
DDX4Q9NQI0 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
DDX4Q9NQI0 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
DDX4Q9NQI0 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC33.48■■■□□ 2.95
DDX4Q9NQI0 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC33.47■■■□□ 2.95
DDX4Q9NQI0 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC33.47■■■□□ 2.95
DDX4Q9NQI0 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
DDX4Q9NQI0 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC33.46■■■□□ 2.95
DDX4Q9NQI0 AL133380.1-201ENST00000506013 324 ntBASIC33.46■■■□□ 2.95
DDX4Q9NQI0 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC33.45■■■□□ 2.95
DDX4Q9NQI0 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC33.45■■■□□ 2.95
DDX4Q9NQI0 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC33.42■■■□□ 2.94
DDX4Q9NQI0 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC33.42■■■□□ 2.94
DDX4Q9NQI0 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC33.41■■■□□ 2.94
DDX4Q9NQI0 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC33.39■■■□□ 2.94
DDX4Q9NQI0 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
DDX4Q9NQI0 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC33.37■■■□□ 2.93
DDX4Q9NQI0 AL391121.1-201ENST00000607967 1349 ntBASIC33.35■■■□□ 2.93
DDX4Q9NQI0 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
DDX4Q9NQI0 RPS2P35-201ENST00000443417 897 ntBASIC33.33■■■□□ 2.93
DDX4Q9NQI0 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
DDX4Q9NQI0 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
DDX4Q9NQI0 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC33.26■■■□□ 2.91
DDX4Q9NQI0 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC33.25■■■□□ 2.91
DDX4Q9NQI0 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC33.24■■■□□ 2.91
DDX4Q9NQI0 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
DDX4Q9NQI0 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC33.19■■■□□ 2.9
DDX4Q9NQI0 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC33.19■■■□□ 2.9
DDX4Q9NQI0 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
DDX4Q9NQI0 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC33.18■■■□□ 2.9
DDX4Q9NQI0 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
DDX4Q9NQI0 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
DDX4Q9NQI0 NRG1-221ENST00000614767 762 ntTSL 5 BASIC33.16■■■□□ 2.9
DDX4Q9NQI0 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC33.16■■■□□ 2.9
DDX4Q9NQI0 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC33.14■■■□□ 2.9
DDX4Q9NQI0 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC33.14■■■□□ 2.9
DDX4Q9NQI0 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC33.13■■■□□ 2.89
DDX4Q9NQI0 AL162393.1-201ENST00000437852 946 ntBASIC33.12■■■□□ 2.89
DDX4Q9NQI0 EBPL-202ENST00000378268 680 ntTSL 3 BASIC33.09■■■□□ 2.89
DDX4Q9NQI0 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
DDX4Q9NQI0 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
DDX4Q9NQI0 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
DDX4Q9NQI0 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
DDX4Q9NQI0 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
DDX4Q9NQI0 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
DDX4Q9NQI0 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC33.02■■■□□ 2.88
DDX4Q9NQI0 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
DDX4Q9NQI0 HNRNPLP2-201ENST00000568980 1570 ntBASIC33■■■□□ 2.87
DDX4Q9NQI0 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
DDX4Q9NQI0 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
DDX4Q9NQI0 AP006261.1-201ENST00000584783 668 ntBASIC32.98■■■□□ 2.87
DDX4Q9NQI0 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC32.96■■■□□ 2.87
DDX4Q9NQI0 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
DDX4Q9NQI0 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
DDX4Q9NQI0 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
DDX4Q9NQI0 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC32.93■■■□□ 2.86
DDX4Q9NQI0 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
DDX4Q9NQI0 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC32.92■■■□□ 2.86
DDX4Q9NQI0 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC32.92■■■□□ 2.86
DDX4Q9NQI0 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC32.91■■■□□ 2.86
DDX4Q9NQI0 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC32.91■■■□□ 2.86
DDX4Q9NQI0 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
DDX4Q9NQI0 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
DDX4Q9NQI0 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
DDX4Q9NQI0 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC32.87■■■□□ 2.85
DDX4Q9NQI0 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC32.86■■■□□ 2.85
DDX4Q9NQI0 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC32.86■■■□□ 2.85
DDX4Q9NQI0 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
DDX4Q9NQI0 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC32.85■■■□□ 2.85
DDX4Q9NQI0 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
DDX4Q9NQI0 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
DDX4Q9NQI0 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
DDX4Q9NQI0 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC32.82■■■□□ 2.84
DDX4Q9NQI0 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC32.8■■■□□ 2.84
DDX4Q9NQI0 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
DDX4Q9NQI0 MIR762-201ENST00000390236 83 ntBASIC32.79■■■□□ 2.84
DDX4Q9NQI0 DUX4L28-201ENST00000623687 678 ntBASIC32.79■■■□□ 2.84
DDX4Q9NQI0 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC32.77■■■□□ 2.84
DDX4Q9NQI0 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC32.76■■■□□ 2.84
DDX4Q9NQI0 MIR3665-201ENST00000578708 105 ntBASIC32.76■■■□□ 2.83
DDX4Q9NQI0 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
DDX4Q9NQI0 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC32.75■■■□□ 2.83
DDX4Q9NQI0 WASH5P-204ENST00000632292 975 ntBASIC32.75■■■□□ 2.83
DDX4Q9NQI0 CHML-205ENST00000638160 705 ntTSL 3 BASIC32.75■■■□□ 2.83
DDX4Q9NQI0 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
DDX4Q9NQI0 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC32.74■■■□□ 2.83
DDX4Q9NQI0 AC087741.3-201ENST00000624270 1347 ntBASIC32.71■■■□□ 2.83
DDX4Q9NQI0 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
DDX4Q9NQI0 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
DDX4Q9NQI0 DENR-202ENST00000455982 1052 ntTSL 5 BASIC32.68■■■□□ 2.82
DDX4Q9NQI0 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC32.68■■■□□ 2.82
DDX4Q9NQI0 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC32.66■■■□□ 2.82
DDX4Q9NQI0 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
DDX4Q9NQI0 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
DDX4Q9NQI0 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
DDX4Q9NQI0 AC005559.1-201ENST00000589661 871 ntBASIC32.64■■■□□ 2.82
DDX4Q9NQI0 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC32.63■■■□□ 2.81
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms