Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
RPAP3Q9H6T3 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC32.66■■■□□ 2.82
RPAP3Q9H6T3 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC32.66■■■□□ 2.82
RPAP3Q9H6T3 RPS2P35-201ENST00000443417 897 ntBASIC32.65■■■□□ 2.82
RPAP3Q9H6T3 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC32.63■■■□□ 2.81
RPAP3Q9H6T3 AL133380.1-201ENST00000506013 324 ntBASIC32.63■■■□□ 2.81
RPAP3Q9H6T3 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
RPAP3Q9H6T3 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
RPAP3Q9H6T3 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
RPAP3Q9H6T3 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC32.59■■■□□ 2.81
RPAP3Q9H6T3 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
RPAP3Q9H6T3 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC32.56■■■□□ 2.8
RPAP3Q9H6T3 AL391121.1-201ENST00000607967 1349 ntBASIC32.56■■■□□ 2.8
RPAP3Q9H6T3 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC32.56■■■□□ 2.8
RPAP3Q9H6T3 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC32.56■■■□□ 2.8
RPAP3Q9H6T3 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
RPAP3Q9H6T3 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
RPAP3Q9H6T3 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
RPAP3Q9H6T3 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
RPAP3Q9H6T3 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC32.47■■■□□ 2.79
RPAP3Q9H6T3 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
RPAP3Q9H6T3 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
RPAP3Q9H6T3 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC32.46■■■□□ 2.79
RPAP3Q9H6T3 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC32.45■■■□□ 2.79
RPAP3Q9H6T3 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC32.43■■■□□ 2.78
RPAP3Q9H6T3 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC32.42■■■□□ 2.78
RPAP3Q9H6T3 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC32.41■■■□□ 2.78
RPAP3Q9H6T3 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC32.4■■■□□ 2.78
RPAP3Q9H6T3 AL162393.1-201ENST00000437852 946 ntBASIC32.39■■■□□ 2.78
RPAP3Q9H6T3 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.39■■■□□ 2.78
RPAP3Q9H6T3 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC32.39■■■□□ 2.78
RPAP3Q9H6T3 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC32.37■■■□□ 2.77
RPAP3Q9H6T3 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC32.36■■■□□ 2.77
RPAP3Q9H6T3 NRG1-221ENST00000614767 762 ntTSL 5 BASIC32.36■■■□□ 2.77
RPAP3Q9H6T3 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
RPAP3Q9H6T3 EBPL-202ENST00000378268 680 ntTSL 3 BASIC32.34■■■□□ 2.77
RPAP3Q9H6T3 AP006261.1-201ENST00000584783 668 ntBASIC32.32■■■□□ 2.76
RPAP3Q9H6T3 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
RPAP3Q9H6T3 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
RPAP3Q9H6T3 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
RPAP3Q9H6T3 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
RPAP3Q9H6T3 HNRNPLP2-201ENST00000568980 1570 ntBASIC32.28■■■□□ 2.76
RPAP3Q9H6T3 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC32.28■■■□□ 2.76
RPAP3Q9H6T3 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC32.27■■■□□ 2.76
RPAP3Q9H6T3 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
RPAP3Q9H6T3 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
RPAP3Q9H6T3 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
RPAP3Q9H6T3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
RPAP3Q9H6T3 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC32.24■■■□□ 2.75
RPAP3Q9H6T3 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC32.23■■■□□ 2.75
RPAP3Q9H6T3 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC32.23■■■□□ 2.75
RPAP3Q9H6T3 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
RPAP3Q9H6T3 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
RPAP3Q9H6T3 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32.2■■■□□ 2.74
RPAP3Q9H6T3 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
RPAP3Q9H6T3 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC32.16■■■□□ 2.74
RPAP3Q9H6T3 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
RPAP3Q9H6T3 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC32.15■■■□□ 2.74
RPAP3Q9H6T3 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
RPAP3Q9H6T3 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
RPAP3Q9H6T3 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC32.11■■■□□ 2.73
RPAP3Q9H6T3 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
RPAP3Q9H6T3 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC32.1■■■□□ 2.73
RPAP3Q9H6T3 MIR3665-201ENST00000578708 105 ntBASIC32.09■■■□□ 2.73
RPAP3Q9H6T3 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC32.09■■■□□ 2.73
RPAP3Q9H6T3 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC32.08■■■□□ 2.73
RPAP3Q9H6T3 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC32.05■■■□□ 2.72
RPAP3Q9H6T3 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
RPAP3Q9H6T3 MIR762-201ENST00000390236 83 ntBASIC32.03■■■□□ 2.72
RPAP3Q9H6T3 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC32.03■■■□□ 2.72
RPAP3Q9H6T3 CHML-205ENST00000638160 705 ntTSL 3 BASIC32.03■■■□□ 2.72
RPAP3Q9H6T3 DUX4L28-201ENST00000623687 678 ntBASIC32.02■■■□□ 2.72
RPAP3Q9H6T3 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
RPAP3Q9H6T3 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
RPAP3Q9H6T3 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC32■■■□□ 2.71
RPAP3Q9H6T3 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.99■■■□□ 2.71
RPAP3Q9H6T3 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.99■■■□□ 2.71
RPAP3Q9H6T3 AC087741.3-201ENST00000624270 1347 ntBASIC31.98■■■□□ 2.71
RPAP3Q9H6T3 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.97■■■□□ 2.71
RPAP3Q9H6T3 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.95■■■□□ 2.71
RPAP3Q9H6T3 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
RPAP3Q9H6T3 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
RPAP3Q9H6T3 AC005559.1-201ENST00000589661 871 ntBASIC31.94■■■□□ 2.7
RPAP3Q9H6T3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.92■■■□□ 2.7
RPAP3Q9H6T3 WASH5P-204ENST00000632292 975 ntBASIC31.92■■■□□ 2.7
RPAP3Q9H6T3 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.92■■■□□ 2.7
RPAP3Q9H6T3 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
RPAP3Q9H6T3 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
RPAP3Q9H6T3 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.9■■■□□ 2.7
RPAP3Q9H6T3 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.89■■■□□ 2.7
RPAP3Q9H6T3 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.89■■■□□ 2.69
RPAP3Q9H6T3 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.88■■■□□ 2.69
RPAP3Q9H6T3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
RPAP3Q9H6T3 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC31.87■■■□□ 2.69
RPAP3Q9H6T3 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.87■■■□□ 2.69
RPAP3Q9H6T3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
RPAP3Q9H6T3 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
RPAP3Q9H6T3 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
RPAP3Q9H6T3 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC31.83■■■□□ 2.69
RPAP3Q9H6T3 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.83■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms