Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 MIR4449-201ENST00000578365 66 ntBASIC28.44■■■□□ 2.14
CFAP54Q96N23 MIR3665-201ENST00000578708 105 ntBASIC28.42■■■□□ 2.14
CFAP54Q96N23 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC28.42■■■□□ 2.14
CFAP54Q96N23 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC28.4■■■□□ 2.14
CFAP54Q96N23 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CFAP54Q96N23 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.13
CFAP54Q96N23 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.35■■■□□ 2.13
CFAP54Q96N23 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CFAP54Q96N23 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CFAP54Q96N23 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CFAP54Q96N23 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.33■■■□□ 2.13
CFAP54Q96N23 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC28.31■■■□□ 2.12
CFAP54Q96N23 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC28.29■■■□□ 2.12
CFAP54Q96N23 AC044849.2-201ENST00000606596 710 ntBASIC28.29■■■□□ 2.12
CFAP54Q96N23 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
CFAP54Q96N23 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CFAP54Q96N23 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28.24■■■□□ 2.11
CFAP54Q96N23 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
CFAP54Q96N23 HSD17B1P1-201ENST00000590052 955 ntBASIC28.22■■■□□ 2.11
CFAP54Q96N23 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC28.22■■■□□ 2.11
CFAP54Q96N23 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC28.22■■■□□ 2.11
CFAP54Q96N23 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC28.22■■■□□ 2.11
CFAP54Q96N23 DUX4L28-201ENST00000623687 678 ntBASIC28.22■■■□□ 2.11
CFAP54Q96N23 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC28.19■■■□□ 2.1
CFAP54Q96N23 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CFAP54Q96N23 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CFAP54Q96N23 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC28.16■■■□□ 2.1
CFAP54Q96N23 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC28.16■■■□□ 2.1
CFAP54Q96N23 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
CFAP54Q96N23 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC28.14■■■□□ 2.09
CFAP54Q96N23 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC28.14■■■□□ 2.09
CFAP54Q96N23 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC28.14■■■□□ 2.09
CFAP54Q96N23 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC28.14■■■□□ 2.09
CFAP54Q96N23 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
CFAP54Q96N23 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
CFAP54Q96N23 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC28.06■■■□□ 2.08
CFAP54Q96N23 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CFAP54Q96N23 ZNRF2P2-203ENST00000454624 420 ntBASIC28.04■■■□□ 2.08
CFAP54Q96N23 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC28.04■■■□□ 2.08
CFAP54Q96N23 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
CFAP54Q96N23 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
CFAP54Q96N23 MIR639-201ENST00000384974 98 ntBASIC28.02■■■□□ 2.08
CFAP54Q96N23 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
CFAP54Q96N23 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
CFAP54Q96N23 AC005559.1-201ENST00000589661 871 ntBASIC27.95■■■□□ 2.06
CFAP54Q96N23 BRD4-212ENST00000630599 726 ntTSL 2 BASIC27.94■■■□□ 2.06
CFAP54Q96N23 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC27.94■■■□□ 2.06
CFAP54Q96N23 EBPL-202ENST00000378268 680 ntTSL 3 BASIC27.93■■■□□ 2.06
CFAP54Q96N23 CALM3-209ENST00000597743 577 ntTSL 4 BASIC27.92■■■□□ 2.06
CFAP54Q96N23 MIR762-201ENST00000390236 83 ntBASIC27.9■■■□□ 2.06
CFAP54Q96N23 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC27.9■■■□□ 2.06
CFAP54Q96N23 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC27.9■■■□□ 2.06
CFAP54Q96N23 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
CFAP54Q96N23 AL133380.1-201ENST00000506013 324 ntBASIC27.89■■■□□ 2.06
CFAP54Q96N23 HGH1-207ENST00000628266 258 ntTSL 5 BASIC27.89■■■□□ 2.06
CFAP54Q96N23 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC27.89■■■□□ 2.06
CFAP54Q96N23 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
CFAP54Q96N23 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC27.88■■■□□ 2.05
CFAP54Q96N23 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
CFAP54Q96N23 BOD1-206ENST00000480951 814 ntTSL 2 BASIC27.86■■■□□ 2.05
CFAP54Q96N23 CHML-205ENST00000638160 705 ntTSL 3 BASIC27.85■■■□□ 2.05
CFAP54Q96N23 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
CFAP54Q96N23 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC27.85■■■□□ 2.05
CFAP54Q96N23 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC27.83■■■□□ 2.05
CFAP54Q96N23 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC27.82■■■□□ 2.04
CFAP54Q96N23 AC145285.7-201ENST00000614819 1539 ntBASIC27.8■■■□□ 2.04
CFAP54Q96N23 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
CFAP54Q96N23 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC27.8■■■□□ 2.04
CFAP54Q96N23 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC27.78■■■□□ 2.04
CFAP54Q96N23 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC27.77■■■□□ 2.04
CFAP54Q96N23 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC27.77■■■□□ 2.04
CFAP54Q96N23 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC27.77■■■□□ 2.04
CFAP54Q96N23 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
CFAP54Q96N23 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
CFAP54Q96N23 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC27.75■■■□□ 2.03
CFAP54Q96N23 MACF1-219ENST00000484793 834 ntTSL 2 BASIC27.73■■■□□ 2.03
CFAP54Q96N23 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC27.73■■■□□ 2.03
CFAP54Q96N23 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
CFAP54Q96N23 MIR3648-2-201ENST00000581792 180 ntBASIC27.71■■■□□ 2.03
CFAP54Q96N23 MIR3648-1-201ENST00000615959 180 ntBASIC27.71■■■□□ 2.03
CFAP54Q96N23 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC27.71■■■□□ 2.03
CFAP54Q96N23 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
CFAP54Q96N23 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC27.68■■■□□ 2.02
CFAP54Q96N23 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC27.67■■■□□ 2.02
CFAP54Q96N23 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC27.66■■■□□ 2.02
CFAP54Q96N23 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC27.66■■■□□ 2.02
CFAP54Q96N23 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC27.64■■■□□ 2.02
CFAP54Q96N23 AC016575.1-201ENST00000607026 382 ntBASIC27.64■■■□□ 2.01
CFAP54Q96N23 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
CFAP54Q96N23 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC27.62■■■□□ 2.01
CFAP54Q96N23 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
CFAP54Q96N23 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC27.61■■■□□ 2.01
CFAP54Q96N23 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC27.6■■■□□ 2.01
CFAP54Q96N23 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
CFAP54Q96N23 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC27.58■■■□□ 2.01
CFAP54Q96N23 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
CFAP54Q96N23 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
CFAP54Q96N23 ABHD17AP3-201ENST00000503096 1137 ntBASIC27.53■■■□□ 2
CFAP54Q96N23 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
CFAP54Q96N23 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms