Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC33.11■■■□□ 2.89
SHROOM1Q2M3G4 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
SHROOM1Q2M3G4 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
SHROOM1Q2M3G4 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
SHROOM1Q2M3G4 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC33.08■■■□□ 2.89
SHROOM1Q2M3G4 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC33.08■■■□□ 2.89
SHROOM1Q2M3G4 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
SHROOM1Q2M3G4 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC33.07■■■□□ 2.88
SHROOM1Q2M3G4 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC33.06■■■□□ 2.88
SHROOM1Q2M3G4 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
SHROOM1Q2M3G4 AL133380.1-201ENST00000506013 324 ntBASIC33.01■■■□□ 2.87
SHROOM1Q2M3G4 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC33■■■□□ 2.87
SHROOM1Q2M3G4 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC33■■■□□ 2.87
SHROOM1Q2M3G4 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC33■■■□□ 2.87
SHROOM1Q2M3G4 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
SHROOM1Q2M3G4 RPS2P35-201ENST00000443417 897 ntBASIC32.99■■■□□ 2.87
SHROOM1Q2M3G4 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC32.99■■■□□ 2.87
SHROOM1Q2M3G4 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
SHROOM1Q2M3G4 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC32.95■■■□□ 2.87
SHROOM1Q2M3G4 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM1Q2M3G4 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM1Q2M3G4 AL391121.1-201ENST00000607967 1349 ntBASIC32.91■■■□□ 2.86
SHROOM1Q2M3G4 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
SHROOM1Q2M3G4 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
SHROOM1Q2M3G4 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
SHROOM1Q2M3G4 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
SHROOM1Q2M3G4 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC32.87■■■□□ 2.85
SHROOM1Q2M3G4 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
SHROOM1Q2M3G4 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC32.81■■■□□ 2.84
SHROOM1Q2M3G4 NRG1-221ENST00000614767 762 ntTSL 5 BASIC32.78■■■□□ 2.84
SHROOM1Q2M3G4 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
SHROOM1Q2M3G4 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC32.75■■■□□ 2.83
SHROOM1Q2M3G4 AL162393.1-201ENST00000437852 946 ntBASIC32.73■■■□□ 2.83
SHROOM1Q2M3G4 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC32.73■■■□□ 2.83
SHROOM1Q2M3G4 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
SHROOM1Q2M3G4 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
SHROOM1Q2M3G4 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
SHROOM1Q2M3G4 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
SHROOM1Q2M3G4 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
SHROOM1Q2M3G4 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
SHROOM1Q2M3G4 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC32.67■■■□□ 2.82
SHROOM1Q2M3G4 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.67■■■□□ 2.82
SHROOM1Q2M3G4 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC32.66■■■□□ 2.82
SHROOM1Q2M3G4 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC32.65■■■□□ 2.82
SHROOM1Q2M3G4 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
SHROOM1Q2M3G4 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC32.63■■■□□ 2.81
SHROOM1Q2M3G4 EBPL-202ENST00000378268 680 ntTSL 3 BASIC32.63■■■□□ 2.81
SHROOM1Q2M3G4 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC32.63■■■□□ 2.81
SHROOM1Q2M3G4 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
SHROOM1Q2M3G4 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC32.61■■■□□ 2.81
SHROOM1Q2M3G4 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
SHROOM1Q2M3G4 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
SHROOM1Q2M3G4 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
SHROOM1Q2M3G4 HNRNPLP2-201ENST00000568980 1570 ntBASIC32.53■■■□□ 2.8
SHROOM1Q2M3G4 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
SHROOM1Q2M3G4 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC32.53■■■□□ 2.8
SHROOM1Q2M3G4 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
SHROOM1Q2M3G4 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC32.52■■■□□ 2.8
SHROOM1Q2M3G4 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC32.52■■■□□ 2.8
SHROOM1Q2M3G4 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
SHROOM1Q2M3G4 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC32.51■■■□□ 2.8
SHROOM1Q2M3G4 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC32.5■■■□□ 2.79
SHROOM1Q2M3G4 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
SHROOM1Q2M3G4 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
SHROOM1Q2M3G4 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC32.5■■■□□ 2.79
SHROOM1Q2M3G4 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
SHROOM1Q2M3G4 AP006261.1-201ENST00000584783 668 ntBASIC32.48■■■□□ 2.79
SHROOM1Q2M3G4 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
SHROOM1Q2M3G4 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
SHROOM1Q2M3G4 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
SHROOM1Q2M3G4 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
SHROOM1Q2M3G4 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC32.45■■■□□ 2.79
SHROOM1Q2M3G4 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC32.45■■■□□ 2.79
SHROOM1Q2M3G4 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
SHROOM1Q2M3G4 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC32.43■■■□□ 2.78
SHROOM1Q2M3G4 DUX4L28-201ENST00000623687 678 ntBASIC32.4■■■□□ 2.78
SHROOM1Q2M3G4 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
SHROOM1Q2M3G4 MIR762-201ENST00000390236 83 ntBASIC32.37■■■□□ 2.77
SHROOM1Q2M3G4 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC32.35■■■□□ 2.77
SHROOM1Q2M3G4 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
SHROOM1Q2M3G4 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC32.35■■■□□ 2.77
SHROOM1Q2M3G4 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC32.35■■■□□ 2.77
SHROOM1Q2M3G4 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
SHROOM1Q2M3G4 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC32.34■■■□□ 2.77
SHROOM1Q2M3G4 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC32.32■■■□□ 2.76
SHROOM1Q2M3G4 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC32.31■■■□□ 2.76
SHROOM1Q2M3G4 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC32.31■■■□□ 2.76
SHROOM1Q2M3G4 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
SHROOM1Q2M3G4 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC32.31■■■□□ 2.76
SHROOM1Q2M3G4 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
SHROOM1Q2M3G4 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
SHROOM1Q2M3G4 AC087741.3-201ENST00000624270 1347 ntBASIC32.29■■■□□ 2.76
SHROOM1Q2M3G4 WASH5P-204ENST00000632292 975 ntBASIC32.29■■■□□ 2.76
SHROOM1Q2M3G4 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC32.28■■■□□ 2.76
SHROOM1Q2M3G4 MIR3665-201ENST00000578708 105 ntBASIC32.28■■■□□ 2.76
SHROOM1Q2M3G4 CHML-205ENST00000638160 705 ntTSL 3 BASIC32.28■■■□□ 2.76
SHROOM1Q2M3G4 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC32.27■■■□□ 2.76
SHROOM1Q2M3G4 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC32.25■■■□□ 2.75
SHROOM1Q2M3G4 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
SHROOM1Q2M3G4 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC32.24■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms