Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.23■□□□□ 0.99
PRKDCP78527 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC21.23■□□□□ 0.99
PRKDCP78527 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
PRKDCP78527 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC21.22■□□□□ 0.99
PRKDCP78527 DUX4L28-201ENST00000623687 678 ntBASIC21.21■□□□□ 0.99
PRKDCP78527 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PRKDCP78527 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.2■□□□□ 0.98
PRKDCP78527 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC21.19■□□□□ 0.98
PRKDCP78527 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PRKDCP78527 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRKDCP78527 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC21.18■□□□□ 0.98
PRKDCP78527 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
PRKDCP78527 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.13■□□□□ 0.97
PRKDCP78527 MIR4449-201ENST00000578365 66 ntBASIC21.13■□□□□ 0.97
PRKDCP78527 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC21.12■□□□□ 0.97
PRKDCP78527 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC21.12■□□□□ 0.97
PRKDCP78527 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PRKDCP78527 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.11■□□□□ 0.97
PRKDCP78527 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
PRKDCP78527 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
PRKDCP78527 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.09■□□□□ 0.97
PRKDCP78527 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21.08■□□□□ 0.97
PRKDCP78527 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PRKDCP78527 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PRKDCP78527 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.06■□□□□ 0.96
PRKDCP78527 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC21.06■□□□□ 0.96
PRKDCP78527 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC21.06■□□□□ 0.96
PRKDCP78527 AC145285.7-201ENST00000614819 1539 ntBASIC21.05■□□□□ 0.96
PRKDCP78527 HSD17B1P1-201ENST00000590052 955 ntBASIC21.05■□□□□ 0.96
PRKDCP78527 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRKDCP78527 AC044849.2-201ENST00000606596 710 ntBASIC21.04■□□□□ 0.96
PRKDCP78527 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRKDCP78527 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRKDCP78527 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PRKDCP78527 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC21.02■□□□□ 0.96
PRKDCP78527 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC21■□□□□ 0.95
PRKDCP78527 MIR762-201ENST00000390236 83 ntBASIC20.98■□□□□ 0.95
PRKDCP78527 AL133380.1-201ENST00000506013 324 ntBASIC20.97■□□□□ 0.95
PRKDCP78527 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
PRKDCP78527 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PRKDCP78527 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC20.94■□□□□ 0.94
PRKDCP78527 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC20.94■□□□□ 0.94
PRKDCP78527 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
PRKDCP78527 EBPL-202ENST00000378268 680 ntTSL 3 BASIC20.92■□□□□ 0.94
PRKDCP78527 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
PRKDCP78527 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
PRKDCP78527 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PRKDCP78527 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PRKDCP78527 AC005559.1-201ENST00000589661 871 ntBASIC20.89■□□□□ 0.93
PRKDCP78527 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PRKDCP78527 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PRKDCP78527 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC20.85■□□□□ 0.93
PRKDCP78527 ZNRF2P2-203ENST00000454624 420 ntBASIC20.85■□□□□ 0.93
PRKDCP78527 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.85■□□□□ 0.93
PRKDCP78527 CHML-205ENST00000638160 705 ntTSL 3 BASIC20.85■□□□□ 0.93
PRKDCP78527 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PRKDCP78527 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
PRKDCP78527 MIR639-201ENST00000384974 98 ntBASIC20.83■□□□□ 0.93
PRKDCP78527 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PRKDCP78527 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.8■□□□□ 0.92
PRKDCP78527 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.8■□□□□ 0.92
PRKDCP78527 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PRKDCP78527 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PRKDCP78527 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.78■□□□□ 0.92
PRKDCP78527 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PRKDCP78527 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PRKDCP78527 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRKDCP78527 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRKDCP78527 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC20.76■□□□□ 0.91
PRKDCP78527 CALM3-209ENST00000597743 577 ntTSL 4 BASIC20.76■□□□□ 0.91
PRKDCP78527 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PRKDCP78527 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
PRKDCP78527 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.73■□□□□ 0.91
PRKDCP78527 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC20.72■□□□□ 0.91
PRKDCP78527 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
PRKDCP78527 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.72■□□□□ 0.91
PRKDCP78527 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
PRKDCP78527 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.72■□□□□ 0.91
PRKDCP78527 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PRKDCP78527 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.71■□□□□ 0.91
PRKDCP78527 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRKDCP78527 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRKDCP78527 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC20.69■□□□□ 0.9
PRKDCP78527 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.68■□□□□ 0.9
PRKDCP78527 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
PRKDCP78527 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.68■□□□□ 0.9
PRKDCP78527 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PRKDCP78527 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.67■□□□□ 0.9
PRKDCP78527 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.66■□□□□ 0.9
PRKDCP78527 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRKDCP78527 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PRKDCP78527 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PRKDCP78527 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRKDCP78527 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
PRKDCP78527 MVK-208ENST00000539696 608 ntTSL 5 BASIC20.65■□□□□ 0.9
PRKDCP78527 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PRKDCP78527 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.65■□□□□ 0.9
PRKDCP78527 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
PRKDCP78527 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC20.64■□□□□ 0.9
PRKDCP78527 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms