Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CKS1BP61024 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CKS1BP61024 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CKS1BP61024 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CKS1BP61024 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CKS1BP61024 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
CKS1BP61024 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CKS1BP61024 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CKS1BP61024 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CKS1BP61024 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CKS1BP61024 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC19■□□□□ 0.63
CKS1BP61024 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC19■□□□□ 0.63
CKS1BP61024 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CKS1BP61024 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
CKS1BP61024 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CKS1BP61024 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CKS1BP61024 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CKS1BP61024 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CKS1BP61024 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CKS1BP61024 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CKS1BP61024 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC18.97■□□□□ 0.63
CKS1BP61024 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CKS1BP61024 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC18.97■□□□□ 0.63
CKS1BP61024 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CKS1BP61024 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CKS1BP61024 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CKS1BP61024 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CKS1BP61024 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CKS1BP61024 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CKS1BP61024 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CKS1BP61024 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CKS1BP61024 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CKS1BP61024 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CKS1BP61024 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CKS1BP61024 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CKS1BP61024 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC18.93■□□□□ 0.62
CKS1BP61024 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CKS1BP61024 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
CKS1BP61024 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CKS1BP61024 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC18.92■□□□□ 0.62
CKS1BP61024 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CKS1BP61024 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CKS1BP61024 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CKS1BP61024 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CKS1BP61024 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CKS1BP61024 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CKS1BP61024 INO80B-203ENST00000409917 796 ntTSL 2 BASIC18.89■□□□□ 0.61
CKS1BP61024 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CKS1BP61024 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CKS1BP61024 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CKS1BP61024 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CKS1BP61024 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CKS1BP61024 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CKS1BP61024 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CKS1BP61024 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CKS1BP61024 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CKS1BP61024 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
CKS1BP61024 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CKS1BP61024 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CKS1BP61024 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CKS1BP61024 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CKS1BP61024 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC18.83■□□□□ 0.6
CKS1BP61024 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CKS1BP61024 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CKS1BP61024 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CKS1BP61024 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CKS1BP61024 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CKS1BP61024 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CKS1BP61024 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CKS1BP61024 AC015813.7-201ENST00000623294 581 ntBASIC18.78■□□□□ 0.6
CKS1BP61024 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CKS1BP61024 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CKS1BP61024 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC18.75■□□□□ 0.59
CKS1BP61024 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
CKS1BP61024 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CKS1BP61024 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CKS1BP61024 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
CKS1BP61024 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CKS1BP61024 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CKS1BP61024 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CKS1BP61024 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CKS1BP61024 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CKS1BP61024 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CKS1BP61024 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC18.71■□□□□ 0.58
CKS1BP61024 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CKS1BP61024 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CKS1BP61024 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CKS1BP61024 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC18.7■□□□□ 0.58
CKS1BP61024 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CKS1BP61024 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CKS1BP61024 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CKS1BP61024 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CKS1BP61024 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CKS1BP61024 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CKS1BP61024 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CKS1BP61024 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CKS1BP61024 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CKS1BP61024 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC18.67■□□□□ 0.58
CKS1BP61024 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC18.67■□□□□ 0.58
CKS1BP61024 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms