Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
MSH4O15457 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.52■■■□□ 2.64
MSH4O15457 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.5■■■□□ 2.63
MSH4O15457 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
MSH4O15457 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.47■■■□□ 2.63
MSH4O15457 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
MSH4O15457 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.45■■■□□ 2.63
MSH4O15457 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
MSH4O15457 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.43■■■□□ 2.62
MSH4O15457 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.43■■■□□ 2.62
MSH4O15457 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
MSH4O15457 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
MSH4O15457 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
MSH4O15457 SETD8P1-201ENST00000623146 1180 ntBASIC31.38■■■□□ 2.61
MSH4O15457 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.36■■■□□ 2.61
MSH4O15457 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
MSH4O15457 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31.36■■■□□ 2.61
MSH4O15457 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
MSH4O15457 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
MSH4O15457 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
MSH4O15457 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.34■■■□□ 2.61
MSH4O15457 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
MSH4O15457 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
MSH4O15457 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
MSH4O15457 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.6
MSH4O15457 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.32■■■□□ 2.6
MSH4O15457 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
MSH4O15457 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
MSH4O15457 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
MSH4O15457 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.28■■■□□ 2.6
MSH4O15457 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31.27■■■□□ 2.6
MSH4O15457 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.27■■■□□ 2.6
MSH4O15457 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.26■■■□□ 2.59
MSH4O15457 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.25■■■□□ 2.59
MSH4O15457 AC136428.2-201ENST00000563187 214 ntBASIC31.25■■■□□ 2.59
MSH4O15457 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.23■■■□□ 2.59
MSH4O15457 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
MSH4O15457 AC097358.2-201ENST00000607541 1159 ntBASIC31.23■■■□□ 2.59
MSH4O15457 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC31.23■■■□□ 2.59
MSH4O15457 AL133380.1-201ENST00000506013 324 ntBASIC31.22■■■□□ 2.59
MSH4O15457 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC31.21■■■□□ 2.59
MSH4O15457 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.18■■■□□ 2.58
MSH4O15457 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.18■■■□□ 2.58
MSH4O15457 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
MSH4O15457 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
MSH4O15457 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.18■■■□□ 2.58
MSH4O15457 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
MSH4O15457 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
MSH4O15457 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
MSH4O15457 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.16■■■□□ 2.58
MSH4O15457 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
MSH4O15457 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.13■■■□□ 2.57
MSH4O15457 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
MSH4O15457 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
MSH4O15457 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.12■■■□□ 2.57
MSH4O15457 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
MSH4O15457 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
MSH4O15457 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.1■■■□□ 2.57
MSH4O15457 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
MSH4O15457 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
MSH4O15457 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.09■■■□□ 2.57
MSH4O15457 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.07■■■□□ 2.57
MSH4O15457 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.07■■■□□ 2.56
MSH4O15457 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.07■■■□□ 2.56
MSH4O15457 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
MSH4O15457 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
MSH4O15457 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
MSH4O15457 CAHM-201ENST00000604200 896 ntBASIC31.02■■■□□ 2.56
MSH4O15457 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.02■■■□□ 2.56
MSH4O15457 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
MSH4O15457 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
MSH4O15457 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
MSH4O15457 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.96■■■□□ 2.55
MSH4O15457 SUZ12P1-203ENST00000578195 985 ntBASIC30.95■■■□□ 2.55
MSH4O15457 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
MSH4O15457 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
MSH4O15457 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.93■■■□□ 2.54
MSH4O15457 AL391121.1-201ENST00000607967 1349 ntBASIC30.93■■■□□ 2.54
MSH4O15457 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.92■■■□□ 2.54
MSH4O15457 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
MSH4O15457 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
MSH4O15457 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
MSH4O15457 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
MSH4O15457 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC30.89■■■□□ 2.54
MSH4O15457 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
MSH4O15457 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
MSH4O15457 AC120057.4-201ENST00000624722 1615 ntBASIC30.87■■■□□ 2.53
MSH4O15457 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.86■■■□□ 2.53
MSH4O15457 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.85■■■□□ 2.53
MSH4O15457 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.85■■■□□ 2.53
MSH4O15457 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC30.84■■■□□ 2.53
MSH4O15457 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
MSH4O15457 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.83■■■□□ 2.53
MSH4O15457 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
MSH4O15457 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
MSH4O15457 WASH5P-204ENST00000632292 975 ntBASIC30.83■■■□□ 2.53
MSH4O15457 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.83■■■□□ 2.53
MSH4O15457 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.83■■■□□ 2.53
MSH4O15457 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
MSH4O15457 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.81■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms