Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CIITAP33076 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC15.63■□□□□ 0.09
CIITAP33076 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CIITAP33076 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.63■□□□□ 0.09
CIITAP33076 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC15.62■□□□□ 0.09
CIITAP33076 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CIITAP33076 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.62■□□□□ 0.09
CIITAP33076 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CIITAP33076 AL365181.3-201ENST00000605886 3222 ntBASIC15.62■□□□□ 0.09
CIITAP33076 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
CIITAP33076 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 ACTBP14-201ENST00000411655 1089 ntBASIC15.62■□□□□ 0.09
CIITAP33076 PFN2-202ENST00000423691 911 ntTSL 2 BASIC15.62■□□□□ 0.09
CIITAP33076 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC15.62■□□□□ 0.09
CIITAP33076 AC005077.3-201ENST00000449614 213 ntBASIC15.62■□□□□ 0.09
CIITAP33076 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC15.62■□□□□ 0.09
CIITAP33076 AC018463.1-201ENST00000456674 917 ntBASIC15.62■□□□□ 0.09
CIITAP33076 RN7SL8P-201ENST00000461771 266 ntBASIC15.62■□□□□ 0.09
CIITAP33076 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC15.62■□□□□ 0.09
CIITAP33076 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC15.62■□□□□ 0.09
CIITAP33076 AC226150.1-201ENST00000544259 466 ntBASIC15.62■□□□□ 0.09
CIITAP33076 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
CIITAP33076 RN7SL556P-201ENST00000582856 298 ntBASIC15.62■□□□□ 0.09
CIITAP33076 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC15.62■□□□□ 0.09
CIITAP33076 RN7SL736P-201ENST00000613111 269 ntBASIC15.62■□□□□ 0.09
CIITAP33076 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC15.62■□□□□ 0.09
CIITAP33076 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC15.62■□□□□ 0.09
CIITAP33076 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
CIITAP33076 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
CIITAP33076 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CIITAP33076 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
CIITAP33076 ZNF493-208ENST00000599461 1769 ntBASIC15.62■□□□□ 0.09
CIITAP33076 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC15.62■□□□□ 0.09
CIITAP33076 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CIITAP33076 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC15.62■□□□□ 0.09
CIITAP33076 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC15.62■□□□□ 0.09
CIITAP33076 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CIITAP33076 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC15.61■□□□□ 0.09
CIITAP33076 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC15.61■□□□□ 0.09
CIITAP33076 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CIITAP33076 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC15.61■□□□□ 0.09
CIITAP33076 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
CIITAP33076 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CIITAP33076 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.61■□□□□ 0.09
CIITAP33076 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC15.61■□□□□ 0.09
CIITAP33076 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC15.61■□□□□ 0.09
CIITAP33076 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC15.61■□□□□ 0.09
CIITAP33076 BUD31-205ENST00000456893 512 ntTSL 5 BASIC15.61■□□□□ 0.09
CIITAP33076 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC15.61■□□□□ 0.09
CIITAP33076 OR2A1-AS1-210ENST00000496968 531 ntBASIC15.61■□□□□ 0.09
CIITAP33076 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
CIITAP33076 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC15.61■□□□□ 0.09
CIITAP33076 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC15.61■□□□□ 0.09
CIITAP33076 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC15.61■□□□□ 0.09
CIITAP33076 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC15.61■□□□□ 0.09
CIITAP33076 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC15.61■□□□□ 0.09
CIITAP33076 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC15.61■□□□□ 0.09
CIITAP33076 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
CIITAP33076 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.61■□□□□ 0.09
CIITAP33076 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CIITAP33076 AC009474.1-201ENST00000455096 1565 ntBASIC15.61■□□□□ 0.09
CIITAP33076 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CIITAP33076 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms