Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC15.88■□□□□ 0.13
SMARCA1P28370 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC15.88■□□□□ 0.13
SMARCA1P28370 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
SMARCA1P28370 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC15.88■□□□□ 0.13
SMARCA1P28370 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC15.88■□□□□ 0.13
SMARCA1P28370 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
SMARCA1P28370 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC15.87■□□□□ 0.13
SMARCA1P28370 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
SMARCA1P28370 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC15.87■□□□□ 0.13
SMARCA1P28370 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
SMARCA1P28370 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
SMARCA1P28370 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC15.87■□□□□ 0.13
SMARCA1P28370 LINP1-201ENST00000417112 917 ntTSL 2 BASIC15.87■□□□□ 0.13
SMARCA1P28370 HLA-DPB2-205ENST00000435074 1188 ntBASIC15.87■□□□□ 0.13
SMARCA1P28370 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC15.87■□□□□ 0.13
SMARCA1P28370 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC15.87■□□□□ 0.13
SMARCA1P28370 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC15.87■□□□□ 0.13
SMARCA1P28370 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC15.87■□□□□ 0.13
SMARCA1P28370 CD44-224ENST00000526669 870 ntTSL 5 BASIC15.87■□□□□ 0.13
SMARCA1P28370 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
SMARCA1P28370 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC15.87■□□□□ 0.13
SMARCA1P28370 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 RN7SL736P-201ENST00000613111 269 ntBASIC15.87■□□□□ 0.13
SMARCA1P28370 WT1-AS_6.1-201ENST00000614919 121 ntBASIC15.87■□□□□ 0.13
SMARCA1P28370 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC15.87■□□□□ 0.13
SMARCA1P28370 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC15.87■□□□□ 0.13
SMARCA1P28370 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC15.87■□□□□ 0.13
SMARCA1P28370 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 LINC00638-201ENST00000555578 2518 ntBASIC15.87■□□□□ 0.13
SMARCA1P28370 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
SMARCA1P28370 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
SMARCA1P28370 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
SMARCA1P28370 AC073869.1-201ENST00000415574 2762 ntBASIC15.87■□□□□ 0.13
SMARCA1P28370 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SMARCA1P28370 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.86■□□□□ 0.13
SMARCA1P28370 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
SMARCA1P28370 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SMARCA1P28370 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
SMARCA1P28370 FUK-202ENST00000378912 3925 ntTSL 2 BASIC15.86■□□□□ 0.13
SMARCA1P28370 MSNP1-201ENST00000511640 1732 ntBASIC15.86■□□□□ 0.13
SMARCA1P28370 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC15.86■□□□□ 0.13
SMARCA1P28370 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SMARCA1P28370 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.86■□□□□ 0.13
SMARCA1P28370 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC15.86■□□□□ 0.13
SMARCA1P28370 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 AL357563.1-201ENST00000404728 395 ntBASIC15.86■□□□□ 0.13
SMARCA1P28370 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC15.86■□□□□ 0.13
SMARCA1P28370 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC15.86■□□□□ 0.13
SMARCA1P28370 MPRIPP1-201ENST00000452433 1089 ntBASIC15.86■□□□□ 0.13
SMARCA1P28370 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC15.86■□□□□ 0.13
SMARCA1P28370 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 PFN2-212ENST00000490975 858 ntTSL 4 BASIC15.86■□□□□ 0.13
SMARCA1P28370 AC093826.1-201ENST00000508655 993 ntBASIC15.86■□□□□ 0.13
SMARCA1P28370 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC15.86■□□□□ 0.13
SMARCA1P28370 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 SAA2-206ENST00000530400 323 ntTSL 3 BASIC15.86■□□□□ 0.13
SMARCA1P28370 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC15.86■□□□□ 0.13
SMARCA1P28370 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC15.86■□□□□ 0.13
SMARCA1P28370 MT3-202ENST00000561640 514 ntTSL 3 BASIC15.86■□□□□ 0.13
SMARCA1P28370 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC15.86■□□□□ 0.13
SMARCA1P28370 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
SMARCA1P28370 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
SMARCA1P28370 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms