Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VCANP13611 S100A1-203ENST00000368698 784 ntTSL 2 BASIC13.89□□□□□ -0.19
VCANP13611 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC13.89□□□□□ -0.19
VCANP13611 CHN2-214ENST00000439711 755 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VCANP13611 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC13.89□□□□□ -0.19
VCANP13611 AC113346.2-201ENST00000502684 457 ntTSL 5 BASIC13.89□□□□□ -0.19
VCANP13611 IFI27L1-203ENST00000553664 647 ntTSL 5 BASIC13.89□□□□□ -0.19
VCANP13611 LINC02130-201ENST00000566054 518 ntTSL 2 BASIC13.89□□□□□ -0.19
VCANP13611 AFMID-205ENST00000586731 550 ntTSL 3 BASIC13.89□□□□□ -0.19
VCANP13611 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VCANP13611 IQCD-201ENST00000299732 1369 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
VCANP13611 AC126365.1-201ENST00000578585 1514 ntBASIC13.88□□□□□ -0.19
VCANP13611 MARCKSL1P2-201ENST00000401037 976 ntBASIC13.88□□□□□ -0.19
VCANP13611 CNTFR-AS1-201ENST00000436360 892 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC13.88□□□□□ -0.19
VCANP13611 CNTFR-AS1-203ENST00000453642 723 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 AL353807.2-201ENST00000456382 220 ntTSL 5 BASIC13.88□□□□□ -0.19
VCANP13611 FDPS-206ENST00000467076 1178 ntAPPRIS ALT1 TSL 3 BASIC13.88□□□□□ -0.19
VCANP13611 NUP210P2-201ENST00000510577 282 ntBASIC13.88□□□□□ -0.19
VCANP13611 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC13.88□□□□□ -0.19
VCANP13611 Metazoa_SRP.67-201ENST00000617099 296 ntBASIC13.88□□□□□ -0.19
VCANP13611 AC024580.2-201ENST00000623363 231 ntBASIC13.88□□□□□ -0.19
VCANP13611 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 NOMO2-210ENST00000620440 1360 ntTSL 5 BASIC13.88□□□□□ -0.19
VCANP13611 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 PPIG-208ENST00000462903 1516 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 MYADML-201ENST00000474610 2147 ntBASIC13.88□□□□□ -0.19
VCANP13611 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC13.88□□□□□ -0.19
VCANP13611 CA6-201ENST00000377436 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 CA6-202ENST00000377442 747 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 SNORA47-201ENST00000458862 138 ntBASIC13.88□□□□□ -0.19
VCANP13611 FAM86B1-215ENST00000533513 725 ntTSL 5 BASIC13.88□□□□□ -0.19
VCANP13611 FAM95B1-214ENST00000593216 759 ntTSL 5 BASIC13.88□□□□□ -0.19
VCANP13611 AC138430.2-201ENST00000624068 504 ntBASIC13.88□□□□□ -0.19
VCANP13611 AL160408.6-201ENST00000632063 1257 ntTSL 5 BASIC13.88□□□□□ -0.19
VCANP13611 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 CDK7-201ENST00000256443 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 CICP14-201ENST00000629111 2732 ntBASIC13.88□□□□□ -0.19
VCANP13611 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.88□□□□□ -0.19
VCANP13611 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.88□□□□□ -0.19
VCANP13611 RPL15-202ENST00000354811 820 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC13.88□□□□□ -0.19
VCANP13611 PPP1R7-206ENST00000406106 965 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
VCANP13611 CNN2P9-201ENST00000417134 909 ntBASIC13.88□□□□□ -0.19
VCANP13611 AC041040.1-201ENST00000425197 460 ntBASIC13.88□□□□□ -0.19
VCANP13611 AL139220.1-201ENST00000436802 520 ntBASIC13.88□□□□□ -0.19
VCANP13611 MARVELD3-205ENST00000567501 582 ntAPPRIS ALT2 TSL 3 BASIC13.88□□□□□ -0.19
VCANP13611 AC092069.1-201ENST00000589120 270 ntTSL 3 BASIC13.88□□□□□ -0.19
VCANP13611 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC13.88□□□□□ -0.19
VCANP13611 AP003419.3-201ENST00000613900 527 ntTSL 3 BASIC13.88□□□□□ -0.19
VCANP13611 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VCANP13611 AC073585.1-201ENST00000368895 1328 ntBASIC13.88□□□□□ -0.19
VCANP13611 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
VCANP13611 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC13.87□□□□□ -0.19
VCANP13611 LINC00552-201ENST00000625151 2579 ntBASIC13.87□□□□□ -0.19
VCANP13611 TSGA10-201ENST00000355053 3037 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
VCANP13611 THYN1-202ENST00000352327 835 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
VCANP13611 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VCANP13611 C3orf36-201ENST00000408895 1668 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
VCANP13611 LINC00313-206ENST00000441283 448 ntTSL 3 BASIC13.87□□□□□ -0.19
VCANP13611 RPL35P1-201ENST00000450819 370 ntBASIC13.87□□□□□ -0.19
VCANP13611 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC13.87□□□□□ -0.19
VCANP13611 AC127496.5-202ENST00000572036 869 ntTSL 5 BASIC13.87□□□□□ -0.19
VCANP13611 AC110285.1-201ENST00000572077 665 ntTSL 3 BASIC13.87□□□□□ -0.19
VCANP13611 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.87□□□□□ -0.19
VCANP13611 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VCANP13611 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VCANP13611 CHRNA1-208ENST00000636168 1862 ntTSL 5 BASIC13.87□□□□□ -0.19
VCANP13611 SUCLG2-203ENST00000492795 1512 ntTSL 2 BASIC13.87□□□□□ -0.19
VCANP13611 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
VCANP13611 RN7SL162P-201ENST00000579233 292 ntBASIC13.87□□□□□ -0.19
VCANP13611 RN7SL134P-201ENST00000579756 303 ntBASIC13.87□□□□□ -0.19
VCANP13611 AL590094.1-206ENST00000635959 478 ntTSL 5 BASIC13.87□□□□□ -0.19
VCANP13611 AL590094.1-209ENST00000637260 499 ntTSL 5 BASIC13.87□□□□□ -0.19
VCANP13611 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VCANP13611 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
VCANP13611 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.87□□□□□ -0.19
VCANP13611 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.87□□□□□ -0.19
VCANP13611 DDC-204ENST00000426377 1700 ntTSL 3 BASIC13.87□□□□□ -0.19
VCANP13611 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VCANP13611 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
VCANP13611 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
VCANP13611 SPINK4-201ENST00000379721 402 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms