Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
ZIC3O60481 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC12.51□□□□□ -0.41
ZIC3O60481 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC12.51□□□□□ -0.41
ZIC3O60481 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
ZIC3O60481 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 AC005840.4-201ENST00000541242 2494 ntBASIC12.51□□□□□ -0.41
ZIC3O60481 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
ZIC3O60481 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC12.51□□□□□ -0.41
ZIC3O60481 NCLP1-201ENST00000445357 1963 ntBASIC12.51□□□□□ -0.41
ZIC3O60481 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC12.51□□□□□ -0.41
ZIC3O60481 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
ZIC3O60481 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC12.51□□□□□ -0.41
ZIC3O60481 AC073210.1-201ENST00000414799 232 ntBASIC12.51□□□□□ -0.41
ZIC3O60481 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC12.51□□□□□ -0.41
ZIC3O60481 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC12.51□□□□□ -0.41
ZIC3O60481 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC12.51□□□□□ -0.41
ZIC3O60481 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC12.51□□□□□ -0.41
ZIC3O60481 AC006529.1-201ENST00000459978 637 ntBASIC12.51□□□□□ -0.41
ZIC3O60481 AC104784.1-201ENST00000473096 294 ntBASIC12.51□□□□□ -0.41
ZIC3O60481 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC12.51□□□□□ -0.41
ZIC3O60481 EEF1GP8-201ENST00000506566 1154 ntBASIC12.51□□□□□ -0.41
ZIC3O60481 RPS23-204ENST00000507980 836 ntTSL 2 BASIC12.51□□□□□ -0.41
ZIC3O60481 AP003398.1-201ENST00000531124 318 ntBASIC12.51□□□□□ -0.41
ZIC3O60481 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC12.51□□□□□ -0.41
ZIC3O60481 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC12.51□□□□□ -0.41
ZIC3O60481 JPT2-214ENST00000569765 782 ntTSL 2 BASIC12.51□□□□□ -0.41
ZIC3O60481 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC12.51□□□□□ -0.41
ZIC3O60481 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC12.51□□□□□ -0.41
ZIC3O60481 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
ZIC3O60481 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 AC090502.4-201ENST00000551714 1386 ntBASIC12.51□□□□□ -0.41
ZIC3O60481 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC12.51□□□□□ -0.41
ZIC3O60481 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
ZIC3O60481 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC12.51□□□□□ -0.41
ZIC3O60481 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC12.51□□□□□ -0.41
ZIC3O60481 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
ZIC3O60481 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
ZIC3O60481 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
ZIC3O60481 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC12.5□□□□□ -0.41
ZIC3O60481 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC12.5□□□□□ -0.41
ZIC3O60481 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
ZIC3O60481 CR383656.2-201ENST00000548656 2254 ntBASIC12.5□□□□□ -0.41
ZIC3O60481 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC12.5□□□□□ -0.41
ZIC3O60481 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC12.5□□□□□ -0.41
ZIC3O60481 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC12.5□□□□□ -0.41
ZIC3O60481 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
ZIC3O60481 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
ZIC3O60481 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC12.5□□□□□ -0.41
ZIC3O60481 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC12.5□□□□□ -0.41
ZIC3O60481 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC12.5□□□□□ -0.41
ZIC3O60481 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC12.5□□□□□ -0.41
ZIC3O60481 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 AC093300.1-201ENST00000510368 1201 ntBASIC12.5□□□□□ -0.41
ZIC3O60481 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC12.5□□□□□ -0.41
ZIC3O60481 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC12.5□□□□□ -0.41
ZIC3O60481 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
ZIC3O60481 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC12.5□□□□□ -0.41
ZIC3O60481 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC12.5□□□□□ -0.41
ZIC3O60481 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC12.5□□□□□ -0.41
ZIC3O60481 AL356740.1-201ENST00000602192 1297 ntBASIC12.5□□□□□ -0.41
ZIC3O60481 ST5-261ENST00000626808 1071 ntTSL 5 BASIC12.5□□□□□ -0.41
ZIC3O60481 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC12.5□□□□□ -0.41
ZIC3O60481 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC12.5□□□□□ -0.41
ZIC3O60481 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC12.5□□□□□ -0.41
ZIC3O60481 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ZIC3O60481 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms