Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 RPL7P35-201ENST00000446943 740 ntBASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 AC138701.2-201ENST00000553634 226 ntBASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 NPM1P43-201ENST00000558669 786 ntBASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 RN7SL665P-201ENST00000578793 300 ntBASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 MIR7845-201ENST00000618396 99 ntBASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 SLC6A6P1-201ENST00000413933 1850 ntBASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 NUTM2HP-201ENST00000442076 2498 ntBASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 TEKT4P2-202ENST00000559466 1312 ntBASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP2Q9UDT6 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 USP17L6P-201ENST00000382470 1197 ntBASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 RPSAP31-201ENST00000416648 895 ntBASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 CHCHD2P2-201ENST00000503744 321 ntBASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 AC095040.1-201ENST00000513286 675 ntBASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 AC025262.2-201ENST00000623975 1056 ntBASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 AC092978.1-202ENST00000637590 1327 ntBASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 AC073548.1-201ENST00000624088 1882 ntBASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 RPL13AP3-202ENST00000494676 1473 ntBASIC16.61■□□□□ 0.25
CLIP2Q9UDT6 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 BX679664.3-201ENST00000414070 555 ntBASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 AC079112.1-201ENST00000454972 939 ntBASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 KRT18P15-201ENST00000458108 1291 ntBASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 AC113935.1-201ENST00000471722 555 ntBASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 AC104784.1-201ENST00000473096 294 ntBASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 CMC2-204ENST00000562713 573 ntTSL 3 BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 HERC2P11-201ENST00000562845 725 ntBASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 CMC2-209ENST00000565108 399 ntTSL 2 BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 AC100756.2-201ENST00000569537 736 ntBASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
CLIP2Q9UDT6 MIR3180-2-201ENST00000581748 88 ntBASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 146.7 ms