Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
CCDC28BQ9BUN5 MICAL1-208ENST00000630715 3678 ntTSL 2 BASIC13.65□□□□□ -0.23
CCDC28BQ9BUN5 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 CPN2-201ENST00000323830 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 DYNC1I2-204ENST00000409317 2196 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 PPT1-204ENST00000439754 2195 ntTSL 3 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 LINC00442-202ENST00000456737 2063 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 AMT-256ENST00000638063 1783 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 AC093462.1-201ENST00000621167 1683 ntBASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 PARVG-202ENST00000415224 999 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 CNN2P8-201ENST00000421872 913 ntBASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 AC002472.2-201ENST00000442739 958 ntBASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 ESRRAP2-203ENST00000453309 822 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 TP53TG3HP-202ENST00000569755 579 ntBASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 PIGL-212ENST00000581006 554 ntTSL 4 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 AJ011932.1-201ENST00000621707 465 ntBASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 AL161773.1-201ENST00000624845 863 ntBASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 KCNMA1-232ENST00000638306 3811 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 MKNK1-201ENST00000341183 2612 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 AL021155.1-201ENST00000438808 2637 ntBASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 ZBED2-201ENST00000317012 2311 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 GHITM-201ENST00000372134 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 TVP23A-201ENST00000299866 3360 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 AC126564.1-201ENST00000623628 2013 ntBASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 NR1H3-201ENST00000395397 1501 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 NDRG4-201ENST00000258187 3324 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 DUT-208ENST00000559540 1441 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC28BQ9BUN5 NR1H3-217ENST00000467728 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 H1FX-AS1-201ENST00000383461 2600 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 TNRC18P1-201ENST00000502875 3650 ntBASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 NUDT9-203ENST00000473942 2458 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 DGCR5-201ENST00000399539 862 ntBASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 AC092580.1-201ENST00000433998 658 ntBASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 RFPL4AP1-201ENST00000530883 850 ntBASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 PGAM1P5-201ENST00000548011 764 ntBASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 CBFB-203ENST00000561924 584 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms