Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CARS-214ENST00000529772 2637 ntTSL 2 BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 AP000356.3-201ENST00000382243 753 ntBASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 AC138701.2-201ENST00000553634 226 ntBASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 KRT8P2-201ENST00000556193 944 ntBASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.21□□□□□ -0.13
SHROOM3Q8TF72 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
SHROOM3Q8TF72 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC14.21□□□□□ -0.14
SHROOM3Q8TF72 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC14.21□□□□□ -0.14
SHROOM3Q8TF72 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SHROOM3Q8TF72 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
SHROOM3Q8TF72 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC14.21□□□□□ -0.14
SHROOM3Q8TF72 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SHROOM3Q8TF72 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.21□□□□□ -0.14
SHROOM3Q8TF72 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
SHROOM3Q8TF72 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 KRT8P18-201ENST00000413425 1445 ntBASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 C2orf69P1-201ENST00000563532 1093 ntBASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 AC009084.3-201ENST00000623356 437 ntBASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 EGLN3-205ENST00000547327 2849 ntBASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 AC099521.3-201ENST00000624251 2938 ntBASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SHROOM3Q8TF72 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC14.19□□□□□ -0.14
SHROOM3Q8TF72 AC020917.4-201ENST00000623994 1999 ntBASIC14.19□□□□□ -0.14
SHROOM3Q8TF72 AC004241.5-201ENST00000623870 2448 ntBASIC14.19□□□□□ -0.14
SHROOM3Q8TF72 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SHROOM3Q8TF72 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC14.19□□□□□ -0.14
SHROOM3Q8TF72 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC14.19□□□□□ -0.14
SHROOM3Q8TF72 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SHROOM3Q8TF72 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SHROOM3Q8TF72 DDX19B-202ENST00000355992 1692 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SHROOM3Q8TF72 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 134.4 ms