Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC12.9□□□□□ -0.34
RFC3P40938 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
RFC3P40938 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
RFC3P40938 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC12.9□□□□□ -0.34
RFC3P40938 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC12.9□□□□□ -0.34
RFC3P40938 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC12.9□□□□□ -0.34
RFC3P40938 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC12.9□□□□□ -0.34
RFC3P40938 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
RFC3P40938 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC12.9□□□□□ -0.34
RFC3P40938 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
RFC3P40938 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 AC006987.1-201ENST00000413610 527 ntBASIC12.9□□□□□ -0.34
RFC3P40938 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC12.9□□□□□ -0.34
RFC3P40938 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
RFC3P40938 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC12.9□□□□□ -0.34
RFC3P40938 AC005740.1-201ENST00000515639 522 ntBASIC12.9□□□□□ -0.34
RFC3P40938 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC12.9□□□□□ -0.34
RFC3P40938 NEU3-207ENST00000534628 746 ntTSL 2 BASIC12.9□□□□□ -0.34
RFC3P40938 NUDT4P2-201ENST00000578341 546 ntBASIC12.9□□□□□ -0.34
RFC3P40938 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC12.9□□□□□ -0.34
RFC3P40938 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC12.9□□□□□ -0.34
RFC3P40938 TP53-221ENST00000615910 1149 ntTSL 5 BASIC12.9□□□□□ -0.34
RFC3P40938 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.9□□□□□ -0.34
RFC3P40938 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC12.9□□□□□ -0.34
RFC3P40938 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
RFC3P40938 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
RFC3P40938 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
RFC3P40938 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC12.9□□□□□ -0.34
RFC3P40938 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
RFC3P40938 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RFC3P40938 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
RFC3P40938 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
RFC3P40938 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
RFC3P40938 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
RFC3P40938 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC12.89□□□□□ -0.35
RFC3P40938 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC12.89□□□□□ -0.35
RFC3P40938 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
RFC3P40938 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC12.89□□□□□ -0.35
RFC3P40938 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC12.89□□□□□ -0.35
RFC3P40938 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC12.89□□□□□ -0.35
RFC3P40938 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC12.89□□□□□ -0.35
RFC3P40938 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 PYY2-201ENST00000315776 282 ntBASIC12.89□□□□□ -0.35
RFC3P40938 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC12.89□□□□□ -0.35
RFC3P40938 AL512306.1-201ENST00000432698 848 ntBASIC12.89□□□□□ -0.35
RFC3P40938 AC004837.1-201ENST00000446267 564 ntBASIC12.89□□□□□ -0.35
RFC3P40938 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC12.89□□□□□ -0.35
RFC3P40938 AC018463.1-201ENST00000456674 917 ntBASIC12.89□□□□□ -0.35
RFC3P40938 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC12.89□□□□□ -0.35
RFC3P40938 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC12.89□□□□□ -0.35
RFC3P40938 AP003398.1-201ENST00000531124 318 ntBASIC12.89□□□□□ -0.35
RFC3P40938 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC12.89□□□□□ -0.35
RFC3P40938 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
RFC3P40938 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC12.89□□□□□ -0.35
RFC3P40938 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC12.89□□□□□ -0.35
RFC3P40938 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC12.89□□□□□ -0.35
RFC3P40938 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC12.89□□□□□ -0.35
RFC3P40938 AC005041.3-201ENST00000606287 649 ntBASIC12.89□□□□□ -0.35
RFC3P40938 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
RFC3P40938 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RFC3P40938 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms