Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AP003171.2-201ENST00000528208 925 ntBASIC11.6□□□□□ -0.55
CDX1P47902 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC11.6□□□□□ -0.55
CDX1P47902 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC11.6□□□□□ -0.55
CDX1P47902 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC11.6□□□□□ -0.55
CDX1P47902 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC11.6□□□□□ -0.55
CDX1P47902 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC11.6□□□□□ -0.55
CDX1P47902 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
CDX1P47902 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC11.6□□□□□ -0.55
CDX1P47902 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC11.6□□□□□ -0.55
CDX1P47902 ITGA2B-201ENST00000262407 3333 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
CDX1P47902 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC11.6□□□□□ -0.55
CDX1P47902 ZNF148-206ENST00000485866 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC11.6□□□□□ -0.55
CDX1P47902 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
CDX1P47902 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC11.6□□□□□ -0.55
CDX1P47902 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 AL138725.1-201ENST00000407347 1314 ntBASIC11.6□□□□□ -0.55
CDX1P47902 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC11.59□□□□□ -0.55
CDX1P47902 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
CDX1P47902 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 TBX3-201ENST00000257566 4208 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC11.59□□□□□ -0.55
CDX1P47902 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 WTH3DI-201ENST00000623617 3032 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
CDX1P47902 AC027020.2-201ENST00000602585 2389 ntBASIC11.59□□□□□ -0.55
CDX1P47902 AC090505.1-201ENST00000430515 1834 ntBASIC11.59□□□□□ -0.55
CDX1P47902 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC11.59□□□□□ -0.55
CDX1P47902 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 TISP43-201ENST00000409793 538 ntTSL 4 BASIC11.59□□□□□ -0.55
CDX1P47902 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC11.59□□□□□ -0.55
CDX1P47902 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
CDX1P47902 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC11.59□□□□□ -0.55
CDX1P47902 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC11.59□□□□□ -0.55
CDX1P47902 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
CDX1P47902 POM121L10P-201ENST00000436994 1285 ntBASIC11.59□□□□□ -0.55
CDX1P47902 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC11.59□□□□□ -0.55
CDX1P47902 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 USB1-203ENST00000539737 1212 ntTSL 2 BASIC11.59□□□□□ -0.55
CDX1P47902 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC11.59□□□□□ -0.55
CDX1P47902 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC11.59□□□□□ -0.55
CDX1P47902 AC104982.3-201ENST00000581995 514 ntBASIC11.59□□□□□ -0.55
CDX1P47902 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC11.59□□□□□ -0.55
CDX1P47902 AL022328.3-201ENST00000607943 679 ntBASIC11.59□□□□□ -0.55
CDX1P47902 PRKN-211ENST00000615065 261 ntTSL 5 BASIC11.59□□□□□ -0.55
CDX1P47902 AC002472.3-201ENST00000640124 621 ntBASIC11.59□□□□□ -0.55
CDX1P47902 PRICKLE1-203ENST00000455697 4277 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
CDX1P47902 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC11.59□□□□□ -0.55
CDX1P47902 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC11.59□□□□□ -0.55
CDX1P47902 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC11.59□□□□□ -0.55
CDX1P47902 UAP1L1-201ENST00000360271 3201 ntTSL 2 BASIC11.59□□□□□ -0.55
CDX1P47902 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 GLP1R-201ENST00000373256 3105 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC11.59□□□□□ -0.55
CDX1P47902 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC11.59□□□□□ -0.55
CDX1P47902 ACO2-201ENST00000216254 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CDX1P47902 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.55
CDX1P47902 LITAF-203ENST00000413364 2292 ntTSL 2 BASIC11.58□□□□□ -0.55
CDX1P47902 LINC02015-202ENST00000436078 2957 ntTSL 2 BASIC11.58□□□□□ -0.55
CDX1P47902 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC11.58□□□□□ -0.55
CDX1P47902 CASS4-202ENST00000434344 2888 ntTSL 2 BASIC11.58□□□□□ -0.56
CDX1P47902 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC11.58□□□□□ -0.56
CDX1P47902 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC11.58□□□□□ -0.56
CDX1P47902 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 CPN2-201ENST00000323830 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC11.58□□□□□ -0.56
CDX1P47902 INPP5J-208ENST00000412277 3512 ntTSL 2 BASIC11.58□□□□□ -0.56
CDX1P47902 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CDX1P47902 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms