Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.71■□□□□ 0.11
CIITAP33076 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC15.71■□□□□ 0.11
CIITAP33076 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC15.71■□□□□ 0.11
CIITAP33076 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CIITAP33076 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 AC073210.1-201ENST00000414799 232 ntBASIC15.71■□□□□ 0.11
CIITAP33076 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC15.71■□□□□ 0.11
CIITAP33076 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC15.71■□□□□ 0.11
CIITAP33076 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC15.71■□□□□ 0.11
CIITAP33076 RN7SL375P-201ENST00000492442 298 ntBASIC15.71■□□□□ 0.11
CIITAP33076 IQSEC3P1-201ENST00000538799 536 ntBASIC15.71■□□□□ 0.11
CIITAP33076 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC15.71■□□□□ 0.11
CIITAP33076 RN7SL555P-201ENST00000584742 339 ntBASIC15.71■□□□□ 0.11
CIITAP33076 AL356740.1-201ENST00000602192 1297 ntBASIC15.71■□□□□ 0.11
CIITAP33076 Z98885.3-201ENST00000624882 1757 ntBASIC15.71■□□□□ 0.11
CIITAP33076 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC15.71■□□□□ 0.11
CIITAP33076 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CIITAP33076 ABCD1P2-201ENST00000429313 1601 ntBASIC15.71■□□□□ 0.11
CIITAP33076 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CIITAP33076 NCLP1-201ENST00000445357 1963 ntBASIC15.71■□□□□ 0.1
CIITAP33076 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
CIITAP33076 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CIITAP33076 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC15.71■□□□□ 0.1
CIITAP33076 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC15.7■□□□□ 0.1
CIITAP33076 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CIITAP33076 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.7■□□□□ 0.1
CIITAP33076 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC15.7■□□□□ 0.1
CIITAP33076 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
CIITAP33076 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC15.7■□□□□ 0.1
CIITAP33076 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CIITAP33076 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC15.7■□□□□ 0.1
CIITAP33076 AC092638.2-201ENST00000441105 947 ntBASIC15.7■□□□□ 0.1
CIITAP33076 AC006529.1-201ENST00000459978 637 ntBASIC15.7■□□□□ 0.1
CIITAP33076 CR383656.3-201ENST00000551315 183 ntBASIC15.7■□□□□ 0.1
CIITAP33076 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC15.7■□□□□ 0.1
CIITAP33076 BATF-202ENST00000555504 361 ntTSL 2 BASIC15.7■□□□□ 0.1
CIITAP33076 MIR4649-201ENST00000582839 64 ntBASIC15.7■□□□□ 0.1
CIITAP33076 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC15.7■□□□□ 0.1
CIITAP33076 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC15.7■□□□□ 0.1
CIITAP33076 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC15.7■□□□□ 0.1
CIITAP33076 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC15.7■□□□□ 0.1
CIITAP33076 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC15.7■□□□□ 0.1
CIITAP33076 HELLS-212ENST00000630929 400 ntTSL 5 BASIC15.7■□□□□ 0.1
CIITAP33076 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC15.7■□□□□ 0.1
CIITAP33076 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
CIITAP33076 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CIITAP33076 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC15.7■□□□□ 0.1
CIITAP33076 RCC2P5-201ENST00000492126 1487 ntBASIC15.7■□□□□ 0.1
CIITAP33076 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC15.7■□□□□ 0.1
CIITAP33076 AC040160.2-201ENST00000623816 1675 ntBASIC15.7■□□□□ 0.1
CIITAP33076 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.7■□□□□ 0.1
CIITAP33076 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CIITAP33076 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.7■□□□□ 0.1
CIITAP33076 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CIITAP33076 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC15.69■□□□□ 0.1
CIITAP33076 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms