Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC16.44■□□□□ 0.22
HLA-DOAP06340 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC16.44■□□□□ 0.22
HLA-DOAP06340 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 AQP7P3-201ENST00000624547 1041 ntBASIC16.44■□□□□ 0.22
HLA-DOAP06340 AC002472.4-201ENST00000641915 272 ntBASIC16.44■□□□□ 0.22
HLA-DOAP06340 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
HLA-DOAP06340 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
HLA-DOAP06340 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC16.44■□□□□ 0.22
HLA-DOAP06340 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DOAP06340 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
HLA-DOAP06340 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 DDC-213ENST00000617822 1809 ntTSL 3 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 GGTLC4P-201ENST00000402176 664 ntBASIC16.43■□□□□ 0.22
HLA-DOAP06340 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 AK2P2-201ENST00000439142 405 ntBASIC16.43■□□□□ 0.22
HLA-DOAP06340 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 RN7SL494P-201ENST00000461517 304 ntBASIC16.43■□□□□ 0.22
HLA-DOAP06340 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 MT3-202ENST00000561640 514 ntTSL 3 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 AC011247.3-201ENST00000603297 438 ntBASIC16.43■□□□□ 0.22
HLA-DOAP06340 AC006483.2-201ENST00000609813 515 ntBASIC16.43■□□□□ 0.22
HLA-DOAP06340 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DOAP06340 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
HLA-DOAP06340 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 AL596257.1-201ENST00000641463 2694 ntBASIC16.42■□□□□ 0.22
HLA-DOAP06340 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 AC007279.1-201ENST00000448547 837 ntBASIC16.42■□□□□ 0.22
HLA-DOAP06340 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 AL135901.1-201ENST00000451812 333 ntBASIC16.42■□□□□ 0.22
HLA-DOAP06340 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 PFN2-212ENST00000490975 858 ntTSL 4 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 GOLGA2P7-209ENST00000560408 745 ntBASIC16.42■□□□□ 0.22
HLA-DOAP06340 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 AL672207.1-201ENST00000328462 1570 ntBASIC16.42■□□□□ 0.22
HLA-DOAP06340 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DOAP06340 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HLA-DOAP06340 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms